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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

23 rows where transcript_id = 34480527

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Suggested facets: dinucleotide_pair, score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751214 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 1 500440 500492 Syncephalastrum racemosum 13706 AAA|GTAATTGCAC...GTGTCGTTATTC/TGTGTCGTTATT...AATAG|ATC 0 1 2.791
193751215 GT-AG 0 0.0007039046736653 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 2 500581 500632 Syncephalastrum racemosum 13706 ATG|GTATGCGATC...CTCACCTGGACT/CCCTTTCTCACC...TACAG|GTT 1 1 5.065
193751216 GT-AG 0 1.000000099473604e-05 47 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 3 500700 500746 Syncephalastrum racemosum 13706 CTG|GTAAATGAGA...CTCGTCTAAACC/CCTCGTCTAAAC...CTTAG|GCT 2 1 6.796
193751217 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 4 500832 500882 Syncephalastrum racemosum 13706 GAG|GTGAGTGAAG...GCTTCTTTGACA/GCTTCTTTGACA...ATTAG|ATC 0 1 8.992
193751218 GT-AG 0 1.000000099473604e-05 45 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 5 501231 501275 Syncephalastrum racemosum 13706 AAG|GTAAAGCTTT...CTCGTCTTACTA/TCTCGTCTTACT...TTCAG|GGT 0 1 17.984
193751219 GT-AG 0 0.0010861973214236 46 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 6 501359 501404 Syncephalastrum racemosum 13706 AAC|GTACGTTGCC...ATACTCTCGACT/TCTCGACTAATT...ACTAG|CGT 2 1 20.129
193751220 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 7 501466 501517 Syncephalastrum racemosum 13706 CAG|GTAAAGTTTT...CACGTCTCAACT/TCACGTCTCAAC...ACTAG|GAT 0 1 21.705
193751221 GT-AG 0 1.000000099473604e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 8 501632 501681 Syncephalastrum racemosum 13706 GCT|GTCAGTACAG...GTACCTATACCA/CCATTGCTAACT...AACAG|ATC 0 1 24.651
193751222 GT-AG 0 0.0009314330167779 47 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 9 501761 501807 Syncephalastrum racemosum 13706 TCC|GTAAGCTGGC...ACACATTTAACC/ACACATTTAACC...TGTAG|AGT 1 1 26.693
193751223 GT-AG 0 1.000000099473604e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 10 501967 502016 Syncephalastrum racemosum 13706 CGA|GTAAGTCAAA...TAGACCCTGGTT/CCCTGGTTAAAC...TTTAG|ATA 1 1 30.801
193751224 GT-AG 0 1.000000099473604e-05 47 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 11 502088 502134 Syncephalastrum racemosum 13706 AAG|GTGAGTAGGA...TGATTTATAATG/ATGATACTGACG...TATAG|CTC 0 1 32.636
193751225 GT-AG 0 1.000000099473604e-05 62 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 12 502279 502340 Syncephalastrum racemosum 13706 AAT|GTAGGAACGT...GTATCCTCATCG/TGTATCCTCATC...TCTAG|CTT 0 1 36.357
193751226 GT-AG 0 1.000000099473604e-05 58 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 13 502484 502541 Syncephalastrum racemosum 13706 GAG|GTGAGTGAAG...TCATGTTTGAAA/AGCGTACTCATG...GATAG|GGA 2 1 40.052
193751227 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 14 502649 502697 Syncephalastrum racemosum 13706 TTG|GTAAGGTAGC...TTTGCTTTGATA/TTTGCTTTGATA...GTTAG|CCT 1 1 42.817
193751228 GT-AG 0 1.000000099473604e-05 48 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 15 502820 502867 Syncephalastrum racemosum 13706 CAG|GTACAGTGGC...TTTGTCTTGTTC/CTTGTTCTAACG...AGTAG|TTC 0 1 45.969
193751229 GT-AG 0 1.000000099473604e-05 67 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 16 503031 503097 Syncephalastrum racemosum 13706 CAG|GTGCGCCCGA...TTTTTTTTATTT/TTTTTTTTTATT...TAAAG|TCA 1 1 50.181
193751230 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 17 503271 503322 Syncephalastrum racemosum 13706 GAG|GTAGAAGCTA...TGACCCTTTTCC/AGCGTATTGACC...GGTAG|GCT 0 1 54.651
193751231 GC-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 18 503450 503498 Syncephalastrum racemosum 13706 GAG|GCAAGTATAG...GTACCCAAAACT/CCAAAACTTATG...CCCAG|GTC 1 1 57.933
193751232 GT-AG 0 3.6213501200171406e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 19 503675 503724 Syncephalastrum racemosum 13706 ATG|GTAATGTTTG...GTCCTCTTATAC/CGTCCTCTTATA...AATAG|ATC 0 1 62.481
193751233 GT-AG 0 1.000000099473604e-05 48 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 20 503839 503886 Syncephalastrum racemosum 13706 AAG|GTAAGGGTAT...GGCTACTCATCT/CGGCTACTCATC...GACAG|GGC 0 1 65.426
193751234 GT-AG 0 1.000000099473604e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 21 504073 504132 Syncephalastrum racemosum 13706 GAG|GTGTGTGATT...TATTCTTTCATG/TATTCTTTCATG...TATAG|GGT 0 1 70.233
193751235 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 22 504581 504629 Syncephalastrum racemosum 13706 AAG|GTAACACGAA...TGAAGCTGACCT/GTGAAGCTGACC...GAAAG|ATA 1 1 81.809
193751236 GT-AG 0 1.000000099473604e-05 79 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465295 34480527 23 504818 504896 Syncephalastrum racemosum 13706 TTC|GTAAGTAGAG...GTGTACTCACCT/AGTGTACTCACC...AACAG|AAA 0 1 86.667

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 37.1ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)