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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

12 rows where transcript_id = 34480525

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751197 GT-AG 0 1.875411763439071e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 1 3980129 3980177 Syncephalastrum racemosum 13706 GCA|GTAAGTGCGA...ACGTCTTTATTT/CTTTATTTCAAT...ACTAG|GCG 2 1 22.288
193751198 GT-AG 0 1.000000099473604e-05 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 2 3980243 3980299 Syncephalastrum racemosum 13706 TAT|GTGAGTATGG...GTATGCTTAGTG/TGTATGCTTAGT...AACAG|CTG 1 1 23.894
193751199 GT-AG 0 1.000000099473604e-05 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 3 3980572 3980628 Syncephalastrum racemosum 13706 CAG|GTCAGCCAGT...CAGCCCTTGCTC/CCCTTGCTCACT...ATTAG|GAT 0 1 30.615
193751200 GT-AG 0 1.4173902406811458e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 4 3981416 3981464 Syncephalastrum racemosum 13706 CGA|GTAAGTATAG...CCGTCCCTGATA/CTGATACTGATA...GATAG|ACG 1 1 50.062
193751201 GT-AG 0 1.000000099473604e-05 73 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 5 3981602 3981674 Syncephalastrum racemosum 13706 AAC|GTAAGTCGGA...GATTGCGTAACG/CCCGATCTGATT...TATAG|CCC 0 1 53.447
193751202 GT-AG 0 1.000000099473604e-05 47 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 6 3981803 3981849 Syncephalastrum racemosum 13706 ACC|GTAAGACGGG...ATGCTTATGATA/TAAATGCTTATG...TATAG|GAG 2 1 56.61
193751203 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 7 3981984 3982036 Syncephalastrum racemosum 13706 AAA|GTAATGAGAA...AGATTTATATCG/CGATGACTCACA...TGTAG|CCT 1 1 59.921
193751204 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 8 3982229 3982281 Syncephalastrum racemosum 13706 CCG|GTAAGAGAAA...TTCTCGTTATTA/TCGTTATTAATG...TGTAG|GGA 1 1 64.665
193751205 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 9 3982380 3982433 Syncephalastrum racemosum 13706 TCG|GTAAAAGCGT...ATACCATTATAT/CCTATCCTCACA...TCTAG|ATG 0 1 67.087
193751206 GT-AG 0 9.3002424402681e-05 46 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 10 3982914 3982959 Syncephalastrum racemosum 13706 CAG|GTATGCGTAT...CTAACATTGCCT/GTATGGCTAACA...TCTAG|AAT 0 1 78.947
193751207 GT-AG 0 1.000000099473604e-05 61 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 11 3983045 3983105 Syncephalastrum racemosum 13706 AAT|GTAAAGAAAA...TAATGCTTGACC/ATATTTCTAATG...CATAG|CGT 1 1 81.048
193751208 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 12 3983621 3983671 Syncephalastrum racemosum 13706 ATG|GTAAGCACAA...AGCATCTCACCA/CAGCATCTCACC...GACAG|GGT 0 1 93.773

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 25.567ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)