introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
12 rows where transcript_id = 34480525
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751197 | GT-AG | 0 | 1.875411763439071e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 | 1 | 3980129 | 3980177 | Syncephalastrum racemosum 13706 | GCA|GTAAGTGCGA...ACGTCTTTATTT/CTTTATTTCAAT...ACTAG|GCG | 2 | 1 | 22.288 |
193751198 | GT-AG | 0 | 1.000000099473604e-05 | 57 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 | 2 | 3980243 | 3980299 | Syncephalastrum racemosum 13706 | TAT|GTGAGTATGG...GTATGCTTAGTG/TGTATGCTTAGT...AACAG|CTG | 1 | 1 | 23.894 |
193751199 | GT-AG | 0 | 1.000000099473604e-05 | 57 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 | 3 | 3980572 | 3980628 | Syncephalastrum racemosum 13706 | CAG|GTCAGCCAGT...CAGCCCTTGCTC/CCCTTGCTCACT...ATTAG|GAT | 0 | 1 | 30.615 |
193751200 | GT-AG | 0 | 1.4173902406811458e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 | 4 | 3981416 | 3981464 | Syncephalastrum racemosum 13706 | CGA|GTAAGTATAG...CCGTCCCTGATA/CTGATACTGATA...GATAG|ACG | 1 | 1 | 50.062 |
193751201 | GT-AG | 0 | 1.000000099473604e-05 | 73 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 | 5 | 3981602 | 3981674 | Syncephalastrum racemosum 13706 | AAC|GTAAGTCGGA...GATTGCGTAACG/CCCGATCTGATT...TATAG|CCC | 0 | 1 | 53.447 |
193751202 | GT-AG | 0 | 1.000000099473604e-05 | 47 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 | 6 | 3981803 | 3981849 | Syncephalastrum racemosum 13706 | ACC|GTAAGACGGG...ATGCTTATGATA/TAAATGCTTATG...TATAG|GAG | 2 | 1 | 56.61 |
193751203 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 | 7 | 3981984 | 3982036 | Syncephalastrum racemosum 13706 | AAA|GTAATGAGAA...AGATTTATATCG/CGATGACTCACA...TGTAG|CCT | 1 | 1 | 59.921 |
193751204 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 | 8 | 3982229 | 3982281 | Syncephalastrum racemosum 13706 | CCG|GTAAGAGAAA...TTCTCGTTATTA/TCGTTATTAATG...TGTAG|GGA | 1 | 1 | 64.665 |
193751205 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 | 9 | 3982380 | 3982433 | Syncephalastrum racemosum 13706 | TCG|GTAAAAGCGT...ATACCATTATAT/CCTATCCTCACA...TCTAG|ATG | 0 | 1 | 67.087 |
193751206 | GT-AG | 0 | 9.3002424402681e-05 | 46 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 | 10 | 3982914 | 3982959 | Syncephalastrum racemosum 13706 | CAG|GTATGCGTAT...CTAACATTGCCT/GTATGGCTAACA...TCTAG|AAT | 0 | 1 | 78.947 |
193751207 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 | 11 | 3983045 | 3983105 | Syncephalastrum racemosum 13706 | AAT|GTAAAGAAAA...TAATGCTTGACC/ATATTTCTAATG...CATAG|CGT | 1 | 1 | 81.048 |
193751208 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483797 34480525 | 12 | 3983621 | 3983671 | Syncephalastrum racemosum 13706 | ATG|GTAAGCACAA...AGCATCTCACCA/CAGCATCTCACC...GACAG|GGT | 0 | 1 | 93.773 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);