introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
12 rows where transcript_id = 34480524
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751185 | GT-AG | 0 | 0.006709355744255 | 121 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 | 1 | 912573 | 912693 | Syncephalastrum racemosum 13706 | TTT|GTACGTTGTG...CCTCCTGTGACC/ACCGAATTGAAT...ACGAG|GCA | 0 | 1 | 10.148 |
193751186 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 | 2 | 912273 | 912326 | Syncephalastrum racemosum 13706 | ATG|GTAAGTCAAT...TCATCCTTTTTC/ATGTGTATTATT...TTTAG|CAT | 0 | 1 | 16.222 |
193751187 | GT-AG | 0 | 0.0018040457268237 | 42 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 | 3 | 912169 | 912210 | Syncephalastrum racemosum 13706 | TGA|GTTTACCCAG...AGAGCCCTACTC/GCCCTACTCAGC...ACAAG|CAT | 2 | 1 | 17.753 |
193751188 | GT-AG | 0 | 0.0025968933149556 | 134 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 | 4 | 911868 | 912001 | Syncephalastrum racemosum 13706 | AGC|GTCGCCAGAT...TCGGCTTAGATG/ATGCTTGTGAAC...GCAAG|CGA | 1 | 1 | 21.877 |
193751189 | GT-AG | 0 | 1.000000099473604e-05 | 68 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 | 5 | 911350 | 911417 | Syncephalastrum racemosum 13706 | AAG|GTGAGAGAAA...AACCCCCTGATT/CAGGCGCTAACC...GTTAG|ATG | 1 | 1 | 32.988 |
193751190 | GT-AG | 0 | 0.000167074395644 | 73 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 | 6 | 911127 | 911199 | Syncephalastrum racemosum 13706 | AAC|GTAAGCTCAG...TGTAACTTATTT/ACTTATTTCACT...AATAG|TGG | 1 | 1 | 36.691 |
193751191 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 | 7 | 910760 | 910818 | Syncephalastrum racemosum 13706 | CGA|GTGAGTTGTT...TTCATATTAACA/TTCATATTAACA...GAAAG|GCT | 0 | 1 | 44.296 |
193751192 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 | 8 | 910425 | 910473 | Syncephalastrum racemosum 13706 | AAG|GTAAGTCTTT...ACACCTTTATTT/CCTTTATTTACA...CTTAG|AAC | 1 | 1 | 51.358 |
193751193 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 | 9 | 910159 | 910218 | Syncephalastrum racemosum 13706 | AAG|GTAAGGAGAA...GGCCTCTTGCTG/CTCTTGCTGACG...TCTAG|ATT | 0 | 1 | 56.444 |
193751194 | GT-AG | 0 | 1.0321558562928506e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 | 10 | 909947 | 909996 | Syncephalastrum racemosum 13706 | AAG|GTAAGCCTGG...ATTGTATTGACA/ATTGTATTGACA...AATAG|GTC | 0 | 1 | 60.444 |
193751195 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 | 11 | 909608 | 909660 | Syncephalastrum racemosum 13706 | ACG|GTAAGTTCGA...GCGTCATTATTC/ATTATTCTTACG...CACAG|TAG | 1 | 1 | 67.506 |
193751196 | GT-AG | 0 | 1.000000099473604e-05 | 71 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 | 12 | 909006 | 909076 | Syncephalastrum racemosum 13706 | CTG|GTAAGTTGAC...CTTTCTTTTTCT/GATATGCTCACA...GATAG|CAA | 1 | 1 | 80.617 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);