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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

12 rows where transcript_id = 34480524

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751185 GT-AG 0 0.006709355744255 121 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 1 912573 912693 Syncephalastrum racemosum 13706 TTT|GTACGTTGTG...CCTCCTGTGACC/ACCGAATTGAAT...ACGAG|GCA 0 1 10.148
193751186 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 2 912273 912326 Syncephalastrum racemosum 13706 ATG|GTAAGTCAAT...TCATCCTTTTTC/ATGTGTATTATT...TTTAG|CAT 0 1 16.222
193751187 GT-AG 0 0.0018040457268237 42 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 3 912169 912210 Syncephalastrum racemosum 13706 TGA|GTTTACCCAG...AGAGCCCTACTC/GCCCTACTCAGC...ACAAG|CAT 2 1 17.753
193751188 GT-AG 0 0.0025968933149556 134 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 4 911868 912001 Syncephalastrum racemosum 13706 AGC|GTCGCCAGAT...TCGGCTTAGATG/ATGCTTGTGAAC...GCAAG|CGA 1 1 21.877
193751189 GT-AG 0 1.000000099473604e-05 68 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 5 911350 911417 Syncephalastrum racemosum 13706 AAG|GTGAGAGAAA...AACCCCCTGATT/CAGGCGCTAACC...GTTAG|ATG 1 1 32.988
193751190 GT-AG 0 0.000167074395644 73 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 6 911127 911199 Syncephalastrum racemosum 13706 AAC|GTAAGCTCAG...TGTAACTTATTT/ACTTATTTCACT...AATAG|TGG 1 1 36.691
193751191 GT-AG 0 1.000000099473604e-05 59 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 7 910760 910818 Syncephalastrum racemosum 13706 CGA|GTGAGTTGTT...TTCATATTAACA/TTCATATTAACA...GAAAG|GCT 0 1 44.296
193751192 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 8 910425 910473 Syncephalastrum racemosum 13706 AAG|GTAAGTCTTT...ACACCTTTATTT/CCTTTATTTACA...CTTAG|AAC 1 1 51.358
193751193 GT-AG 0 1.000000099473604e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 9 910159 910218 Syncephalastrum racemosum 13706 AAG|GTAAGGAGAA...GGCCTCTTGCTG/CTCTTGCTGACG...TCTAG|ATT 0 1 56.444
193751194 GT-AG 0 1.0321558562928506e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 10 909947 909996 Syncephalastrum racemosum 13706 AAG|GTAAGCCTGG...ATTGTATTGACA/ATTGTATTGACA...AATAG|GTC 0 1 60.444
193751195 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 11 909608 909660 Syncephalastrum racemosum 13706 ACG|GTAAGTTCGA...GCGTCATTATTC/ATTATTCTTACG...CACAG|TAG 1 1 67.506
193751196 GT-AG 0 1.000000099473604e-05 71 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431249 34480524 12 909006 909076 Syncephalastrum racemosum 13706 CTG|GTAAGTTGAC...CTTTCTTTTTCT/GATATGCTCACA...GATAG|CAA 1 1 80.617

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 27.992ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)