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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

15 rows where transcript_id = 34480523

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751170 GT-AG 0 1.2523989270963775e-05 95 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 1 4760429 4760523 Syncephalastrum racemosum 13706 CTG|GTAAATATCG...ATTTCCTTTTCC/TCCTTTTTCACA...TTCAG|GGT 1 1 11.16
193751171 GT-AG 0 1.000000099473604e-05 86 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 2 4759903 4759988 Syncephalastrum racemosum 13706 CAG|GTAAATATAA...AATTTCTTGGCT/TCTTGGCTCATA...TTTAG|CAA 0 1 21.905
193751172 GT-AG 0 1.000000099473604e-05 62 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 3 4759742 4759803 Syncephalastrum racemosum 13706 TGG|GTAATTAACG...TGGGCCATATGG/GCGAAACTGATA...GTTAG|GGC 0 1 24.322
193751173 GT-AG 0 0.0002886299947626 74 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 4 4759462 4759535 Syncephalastrum racemosum 13706 TGG|GTACGTATTT...ACGCTTTTATTT/ATGGTGCTGACG...TAAAG|TGA 2 1 29.353
193751174 GT-AG 0 1.000000099473604e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 5 4759111 4759170 Syncephalastrum racemosum 13706 GAG|GTAAGTTTTG...GGATGGCTGACG/GGATGGCTGACG...GACAG|TAA 2 1 36.459
193751175 GT-AG 0 0.02280907560152 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 6 4758933 4758992 Syncephalastrum racemosum 13706 TCA|GTATGTATCC...GTCTTCTTACGT/TACGTGCTTATT...TGCAG|ATC 0 1 39.341
193751176 GT-AG 0 1.000000099473604e-05 48 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 7 4758769 4758816 Syncephalastrum racemosum 13706 CAG|GTAAACCAAA...AAATCTATATCT/GGGTGACTGAAT...CATAG|TTT 2 1 42.173
193751177 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 8 4758582 4758635 Syncephalastrum racemosum 13706 CAG|GTAGGGAAAA...GTGTCTTTATCT/TGTGTCTTTATC...ATCAG|GTC 0 1 45.421
193751178 GT-AG 0 3.197761964164044e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 9 4758174 4758233 Syncephalastrum racemosum 13706 CAC|GTAAGTATTG...TGTCTCTTTCCT/CTGAGACTGATT...GTTAG|ACA 0 1 53.919
193751179 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 10 4757899 4757951 Syncephalastrum racemosum 13706 GAG|GTAAAAGGAA...ATTCTTTTAAAG/CTGAATCTGACA...CCCAG|GAA 0 1 59.341
193751180 GT-AG 0 1.000000099473604e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 11 4757417 4757466 Syncephalastrum racemosum 13706 GAG|GTAAACGAGA...GTTATCTTACTG/TGTTATCTTACT...TATAG|CCC 0 1 69.89
193751181 GT-AG 0 1.725781793319382e-05 63 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 12 4756943 4757005 Syncephalastrum racemosum 13706 TGG|GTAATTTATG...GAACTCTTTTCT/AATAGGCTCACA...TCTAG|TAT 0 1 79.927
193751182 GT-AG 0 1.000000099473604e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 13 4756649 4756708 Syncephalastrum racemosum 13706 TTG|GTAAGAGGAA...CGAAATTTGACT/ATTTGACTCATC...CATAG|GTG 0 1 85.641
193751183 GT-AG 0 1.000000099473604e-05 76 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 14 4756430 4756505 Syncephalastrum racemosum 13706 AGA|GTAAGAAATG...TTCTTTTTTTCT/TGATGACTTACG...TGTAG|TAT 2 1 89.133
193751184 GT-AG 0 1.3842183261650124e-05 103 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 15 4756111 4756213 Syncephalastrum racemosum 13706 GTA|GTAAGTACAC...CTGACTTTATTT/AATGGGCTGACT...TGTAG|CAT 2 1 94.408

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 23.363ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)