introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
15 rows where transcript_id = 34480523
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751170 | GT-AG | 0 | 1.2523989270963775e-05 | 95 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 | 1 | 4760429 | 4760523 | Syncephalastrum racemosum 13706 | CTG|GTAAATATCG...ATTTCCTTTTCC/TCCTTTTTCACA...TTCAG|GGT | 1 | 1 | 11.16 |
193751171 | GT-AG | 0 | 1.000000099473604e-05 | 86 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 | 2 | 4759903 | 4759988 | Syncephalastrum racemosum 13706 | CAG|GTAAATATAA...AATTTCTTGGCT/TCTTGGCTCATA...TTTAG|CAA | 0 | 1 | 21.905 |
193751172 | GT-AG | 0 | 1.000000099473604e-05 | 62 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 | 3 | 4759742 | 4759803 | Syncephalastrum racemosum 13706 | TGG|GTAATTAACG...TGGGCCATATGG/GCGAAACTGATA...GTTAG|GGC | 0 | 1 | 24.322 |
193751173 | GT-AG | 0 | 0.0002886299947626 | 74 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 | 4 | 4759462 | 4759535 | Syncephalastrum racemosum 13706 | TGG|GTACGTATTT...ACGCTTTTATTT/ATGGTGCTGACG...TAAAG|TGA | 2 | 1 | 29.353 |
193751174 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 | 5 | 4759111 | 4759170 | Syncephalastrum racemosum 13706 | GAG|GTAAGTTTTG...GGATGGCTGACG/GGATGGCTGACG...GACAG|TAA | 2 | 1 | 36.459 |
193751175 | GT-AG | 0 | 0.02280907560152 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 | 6 | 4758933 | 4758992 | Syncephalastrum racemosum 13706 | TCA|GTATGTATCC...GTCTTCTTACGT/TACGTGCTTATT...TGCAG|ATC | 0 | 1 | 39.341 |
193751176 | GT-AG | 0 | 1.000000099473604e-05 | 48 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 | 7 | 4758769 | 4758816 | Syncephalastrum racemosum 13706 | CAG|GTAAACCAAA...AAATCTATATCT/GGGTGACTGAAT...CATAG|TTT | 2 | 1 | 42.173 |
193751177 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 | 8 | 4758582 | 4758635 | Syncephalastrum racemosum 13706 | CAG|GTAGGGAAAA...GTGTCTTTATCT/TGTGTCTTTATC...ATCAG|GTC | 0 | 1 | 45.421 |
193751178 | GT-AG | 0 | 3.197761964164044e-05 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 | 9 | 4758174 | 4758233 | Syncephalastrum racemosum 13706 | CAC|GTAAGTATTG...TGTCTCTTTCCT/CTGAGACTGATT...GTTAG|ACA | 0 | 1 | 53.919 |
193751179 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 | 10 | 4757899 | 4757951 | Syncephalastrum racemosum 13706 | GAG|GTAAAAGGAA...ATTCTTTTAAAG/CTGAATCTGACA...CCCAG|GAA | 0 | 1 | 59.341 |
193751180 | GT-AG | 0 | 1.000000099473604e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 | 11 | 4757417 | 4757466 | Syncephalastrum racemosum 13706 | GAG|GTAAACGAGA...GTTATCTTACTG/TGTTATCTTACT...TATAG|CCC | 0 | 1 | 69.89 |
193751181 | GT-AG | 0 | 1.725781793319382e-05 | 63 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 | 12 | 4756943 | 4757005 | Syncephalastrum racemosum 13706 | TGG|GTAATTTATG...GAACTCTTTTCT/AATAGGCTCACA...TCTAG|TAT | 0 | 1 | 79.927 |
193751182 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 | 13 | 4756649 | 4756708 | Syncephalastrum racemosum 13706 | TTG|GTAAGAGGAA...CGAAATTTGACT/ATTTGACTCATC...CATAG|GTG | 0 | 1 | 85.641 |
193751183 | GT-AG | 0 | 1.000000099473604e-05 | 76 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 | 14 | 4756430 | 4756505 | Syncephalastrum racemosum 13706 | AGA|GTAAGAAATG...TTCTTTTTTTCT/TGATGACTTACG...TGTAG|TAT | 2 | 1 | 89.133 |
193751184 | GT-AG | 0 | 1.3842183261650124e-05 | 103 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA484330 34480523 | 15 | 4756111 | 4756213 | Syncephalastrum racemosum 13706 | GTA|GTAAGTACAC...CTGACTTTATTT/AATGGGCTGACT...TGTAG|CAT | 2 | 1 | 94.408 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);