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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

14 rows where transcript_id = 34480522

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751156 GT-AG 0 0.0393366673132143 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 1 1320796 1320844 Syncephalastrum racemosum 13706 GTG|GTAACCCCAT...GTATTTTTAGCA/CACTTGCTCATT...TGCAG|CCA 1 1 4.045
193751157 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 2 1320628 1320679 Syncephalastrum racemosum 13706 GGC|GTAAGGATAG...TATTCCCTATGC/CCTATGCTAAAA...TCCAG|GTG 0 1 6.871
193751158 GT-AG 0 5.742366566800323e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 3 1320495 1320543 Syncephalastrum racemosum 13706 AAG|GTATATAAAA...ACGCTTTTAAGC/TTTAAGCTTATA...CATAG|TAC 0 1 8.918
193751159 GT-AG 0 1.000000099473604e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 4 1320277 1320326 Syncephalastrum racemosum 13706 TTG|GTAAGCCAAC...ATTCCACTATCA/ACTATCATCACC...GACAG|GCT 0 1 13.012
193751160 GT-AG 0 9.55730608689114e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 5 1319810 1319869 Syncephalastrum racemosum 13706 TTT|GTAAGTCTTT...TCATCTTCGAAT/TGTACGCTCATC...CCTAG|TTA 2 1 22.929
193751161 GT-AG 0 1.000000099473604e-05 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 6 1319211 1319265 Syncephalastrum racemosum 13706 CAG|GTAAAGCTGC...GAGTGCTAAACG/GGAGTGCTAAAC...GATAG|ATC 0 1 36.184
193751162 GT-AG 0 1.000000099473604e-05 58 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 7 1318933 1318990 Syncephalastrum racemosum 13706 GAG|GTAATACATA...ATATACTGAAAA/GATATACTGAAA...CACAG|AGC 1 1 41.545
193751163 GT-AG 0 1.000000099473604e-05 65 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 8 1318694 1318758 Syncephalastrum racemosum 13706 CAG|GTAATGATGA...AAGATCTTAATG/AAGATCTTAATG...TTTAG|ATT 1 1 45.785
193751164 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 9 1318328 1318376 Syncephalastrum racemosum 13706 AAG|GTAAAAACAC...TTGTGCTGATCA/TTTGTGCTGATC...ATCAG|CAA 0 1 53.509
193751165 GT-AG 0 1.000000099473604e-05 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 10 1317945 1318001 Syncephalastrum racemosum 13706 GAG|GTAAAAGGAA...AGGTTGTTAAGC/CACAAGTTCACA...ACTAG|CGG 2 1 61.452
193751166 GT-AG 0 1.9808711209419225e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 11 1317735 1317785 Syncephalastrum racemosum 13706 AAT|GTAAGCTGGT...ATGTGCTCATCC/TATGTGCTCATC...CTCAG|GAC 2 1 65.327
193751167 GT-AG 0 4.144566312593292e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 12 1317410 1317458 Syncephalastrum racemosum 13706 ATG|GTAAGCTCAA...GGTGCCTGGACT/TGAGTGCTGATA...TTTAG|CAC 2 1 72.052
193751168 GT-AG 0 1.000000099473604e-05 67 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 13 1316471 1316537 Syncephalastrum racemosum 13706 ATG|GTCAGTAGCA...TATTCATTATTA/TATTTATTCATT...TCTAG|TTC 1 1 93.299
193751169 GT-AG 0 1.000000099473604e-05 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 14 1316294 1316348 Syncephalastrum racemosum 13706 GAG|GTAAGCTGAT...AAGGGCTCACCA/TAAGGGCTCACC...CAAAG|ATA 0 1 96.272

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 27.076ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)