introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
14 rows where transcript_id = 34480522
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751156 | GT-AG | 0 | 0.0393366673132143 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 | 1 | 1320796 | 1320844 | Syncephalastrum racemosum 13706 | GTG|GTAACCCCAT...GTATTTTTAGCA/CACTTGCTCATT...TGCAG|CCA | 1 | 1 | 4.045 |
193751157 | GT-AG | 0 | 1.000000099473604e-05 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 | 2 | 1320628 | 1320679 | Syncephalastrum racemosum 13706 | GGC|GTAAGGATAG...TATTCCCTATGC/CCTATGCTAAAA...TCCAG|GTG | 0 | 1 | 6.871 |
193751158 | GT-AG | 0 | 5.742366566800323e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 | 3 | 1320495 | 1320543 | Syncephalastrum racemosum 13706 | AAG|GTATATAAAA...ACGCTTTTAAGC/TTTAAGCTTATA...CATAG|TAC | 0 | 1 | 8.918 |
193751159 | GT-AG | 0 | 1.000000099473604e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 | 4 | 1320277 | 1320326 | Syncephalastrum racemosum 13706 | TTG|GTAAGCCAAC...ATTCCACTATCA/ACTATCATCACC...GACAG|GCT | 0 | 1 | 13.012 |
193751160 | GT-AG | 0 | 9.55730608689114e-05 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 | 5 | 1319810 | 1319869 | Syncephalastrum racemosum 13706 | TTT|GTAAGTCTTT...TCATCTTCGAAT/TGTACGCTCATC...CCTAG|TTA | 2 | 1 | 22.929 |
193751161 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 | 6 | 1319211 | 1319265 | Syncephalastrum racemosum 13706 | CAG|GTAAAGCTGC...GAGTGCTAAACG/GGAGTGCTAAAC...GATAG|ATC | 0 | 1 | 36.184 |
193751162 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 | 7 | 1318933 | 1318990 | Syncephalastrum racemosum 13706 | GAG|GTAATACATA...ATATACTGAAAA/GATATACTGAAA...CACAG|AGC | 1 | 1 | 41.545 |
193751163 | GT-AG | 0 | 1.000000099473604e-05 | 65 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 | 8 | 1318694 | 1318758 | Syncephalastrum racemosum 13706 | CAG|GTAATGATGA...AAGATCTTAATG/AAGATCTTAATG...TTTAG|ATT | 1 | 1 | 45.785 |
193751164 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 | 9 | 1318328 | 1318376 | Syncephalastrum racemosum 13706 | AAG|GTAAAAACAC...TTGTGCTGATCA/TTTGTGCTGATC...ATCAG|CAA | 0 | 1 | 53.509 |
193751165 | GT-AG | 0 | 1.000000099473604e-05 | 57 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 | 10 | 1317945 | 1318001 | Syncephalastrum racemosum 13706 | GAG|GTAAAAGGAA...AGGTTGTTAAGC/CACAAGTTCACA...ACTAG|CGG | 2 | 1 | 61.452 |
193751166 | GT-AG | 0 | 1.9808711209419225e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 | 11 | 1317735 | 1317785 | Syncephalastrum racemosum 13706 | AAT|GTAAGCTGGT...ATGTGCTCATCC/TATGTGCTCATC...CTCAG|GAC | 2 | 1 | 65.327 |
193751167 | GT-AG | 0 | 4.144566312593292e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 | 12 | 1317410 | 1317458 | Syncephalastrum racemosum 13706 | ATG|GTAAGCTCAA...GGTGCCTGGACT/TGAGTGCTGATA...TTTAG|CAC | 2 | 1 | 72.052 |
193751168 | GT-AG | 0 | 1.000000099473604e-05 | 67 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 | 13 | 1316471 | 1316537 | Syncephalastrum racemosum 13706 | ATG|GTCAGTAGCA...TATTCATTATTA/TATTTATTCATT...TCTAG|TTC | 1 | 1 | 93.299 |
193751169 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA555007 34480522 | 14 | 1316294 | 1316348 | Syncephalastrum racemosum 13706 | GAG|GTAAGCTGAT...AAGGGCTCACCA/TAAGGGCTCACC...CAAAG|ATA | 0 | 1 | 96.272 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);