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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

15 rows where transcript_id = 34480521

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751141 GT-AG 0 0.0132380848306901 102 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 1 2906947 2907048 Syncephalastrum racemosum 13706 CTG|GTATGTTCCG...GGCTTCTTACCG/CGGTTACTCACA...TTTAG|CCA 0 1 24.747
193751142 GT-AG 0 1.000000099473604e-05 61 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 2 2906859 2906919 Syncephalastrum racemosum 13706 GCC|GTAAGTAGCA...CGTGCCTGACAG/ATATAACTCATG...TTTAG|GCG 0 1 25.398
193751143 GT-AG 0 1.000000099473604e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 3 2906269 2906328 Syncephalastrum racemosum 13706 CTC|GTAAGTGCGA...ATCTGCATGACT/GCATGACTAATG...CCTAG|ATA 2 1 38.181
193751144 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 4 2905923 2905975 Syncephalastrum racemosum 13706 AAA|GTAAGTTACA...TTCATGTTATAT/GGTACATTCATG...GATAG|ATC 1 1 45.248
193751145 GT-AG 0 1.000000099473604e-05 48 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 5 2905792 2905839 Syncephalastrum racemosum 13706 CTG|GTAAGCAGGC...AACTTGCTGACA/AACTTGCTGACA...TTTAG|TAT 0 1 47.25
193751146 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 6 2905560 2905613 Syncephalastrum racemosum 13706 GAG|GTATGTGGGC...TGTCCCGAAATC/CGAAATCTCATG...TACAG|TTC 1 1 51.544
193751147 GT-AG 0 8.510899891921464e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 7 2905448 2905497 Syncephalastrum racemosum 13706 GAG|GTAAACCTAT...TTTTCTTTCGCT/CTTTCGCTAATG...CATAG|AAA 0 1 53.039
193751148 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 8 2905338 2905388 Syncephalastrum racemosum 13706 TGG|GTAGAGAACA...TTTCGATTGACT/TTTCGATTGACT...TTTAG|CCG 2 1 54.462
193751149 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 9 2905176 2905224 Syncephalastrum racemosum 13706 ATG|GTAACAGAGT...ATACCCCGGGCT/CCCGGGCTCACG...TTCAG|TTG 1 1 57.188
193751150 GT-AG 0 3.098115230513197e-05 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 10 2905042 2905098 Syncephalastrum racemosum 13706 GTT|GTAAGTTAGG...TGAACCTTCTAC/GCGATGCTGAAC...ACCAG|GTC 0 1 59.045
193751151 GT-AG 0 1.000000099473604e-05 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 11 2904777 2904831 Syncephalastrum racemosum 13706 GAG|GTAAGTCATT...TTCTATTTGATT/TTCTATTTGATT...TAAAG|CAT 0 1 64.11
193751152 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 12 2904652 2904700 Syncephalastrum racemosum 13706 TCA|GTAAGTACGC...CTAATATTAGTC/CCAAAACTAATA...AACAG|TTA 1 1 65.943
193751153 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 13 2904427 2904482 Syncephalastrum racemosum 13706 TCG|GTAAGCGACA...GGATCTTGGAAA/AAAAGACTGATT...TGCAG|TGG 2 1 70.019
193751154 GT-AG 0 1.000000099473604e-05 61 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 14 2903887 2903947 Syncephalastrum racemosum 13706 CAG|GTAAGGCAGC...CGTGCATTGATG/GAGTATTTTACA...AAAAG|CGA 1 1 81.573
193751155 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 15 2903734 2903785 Syncephalastrum racemosum 13706 GAG|GTAAACGCGA...CGCACTTTATAT/TTATATCTCATA...TATAG|TAC 0 1 84.009

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 26.887ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)