introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
15 rows where transcript_id = 34480521
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751141 | GT-AG | 0 | 0.0132380848306901 | 102 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 | 1 | 2906947 | 2907048 | Syncephalastrum racemosum 13706 | CTG|GTATGTTCCG...GGCTTCTTACCG/CGGTTACTCACA...TTTAG|CCA | 0 | 1 | 24.747 |
193751142 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 | 2 | 2906859 | 2906919 | Syncephalastrum racemosum 13706 | GCC|GTAAGTAGCA...CGTGCCTGACAG/ATATAACTCATG...TTTAG|GCG | 0 | 1 | 25.398 |
193751143 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 | 3 | 2906269 | 2906328 | Syncephalastrum racemosum 13706 | CTC|GTAAGTGCGA...ATCTGCATGACT/GCATGACTAATG...CCTAG|ATA | 2 | 1 | 38.181 |
193751144 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 | 4 | 2905923 | 2905975 | Syncephalastrum racemosum 13706 | AAA|GTAAGTTACA...TTCATGTTATAT/GGTACATTCATG...GATAG|ATC | 1 | 1 | 45.248 |
193751145 | GT-AG | 0 | 1.000000099473604e-05 | 48 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 | 5 | 2905792 | 2905839 | Syncephalastrum racemosum 13706 | CTG|GTAAGCAGGC...AACTTGCTGACA/AACTTGCTGACA...TTTAG|TAT | 0 | 1 | 47.25 |
193751146 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 | 6 | 2905560 | 2905613 | Syncephalastrum racemosum 13706 | GAG|GTATGTGGGC...TGTCCCGAAATC/CGAAATCTCATG...TACAG|TTC | 1 | 1 | 51.544 |
193751147 | GT-AG | 0 | 8.510899891921464e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 | 7 | 2905448 | 2905497 | Syncephalastrum racemosum 13706 | GAG|GTAAACCTAT...TTTTCTTTCGCT/CTTTCGCTAATG...CATAG|AAA | 0 | 1 | 53.039 |
193751148 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 | 8 | 2905338 | 2905388 | Syncephalastrum racemosum 13706 | TGG|GTAGAGAACA...TTTCGATTGACT/TTTCGATTGACT...TTTAG|CCG | 2 | 1 | 54.462 |
193751149 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 | 9 | 2905176 | 2905224 | Syncephalastrum racemosum 13706 | ATG|GTAACAGAGT...ATACCCCGGGCT/CCCGGGCTCACG...TTCAG|TTG | 1 | 1 | 57.188 |
193751150 | GT-AG | 0 | 3.098115230513197e-05 | 57 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 | 10 | 2905042 | 2905098 | Syncephalastrum racemosum 13706 | GTT|GTAAGTTAGG...TGAACCTTCTAC/GCGATGCTGAAC...ACCAG|GTC | 0 | 1 | 59.045 |
193751151 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 | 11 | 2904777 | 2904831 | Syncephalastrum racemosum 13706 | GAG|GTAAGTCATT...TTCTATTTGATT/TTCTATTTGATT...TAAAG|CAT | 0 | 1 | 64.11 |
193751152 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 | 12 | 2904652 | 2904700 | Syncephalastrum racemosum 13706 | TCA|GTAAGTACGC...CTAATATTAGTC/CCAAAACTAATA...AACAG|TTA | 1 | 1 | 65.943 |
193751153 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 | 13 | 2904427 | 2904482 | Syncephalastrum racemosum 13706 | TCG|GTAAGCGACA...GGATCTTGGAAA/AAAAGACTGATT...TGCAG|TGG | 2 | 1 | 70.019 |
193751154 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 | 14 | 2903887 | 2903947 | Syncephalastrum racemosum 13706 | CAG|GTAAGGCAGC...CGTGCATTGATG/GAGTATTTTACA...AAAAG|CGA | 1 | 1 | 81.573 |
193751155 | GT-AG | 0 | 1.000000099473604e-05 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466739 34480521 | 15 | 2903734 | 2903785 | Syncephalastrum racemosum 13706 | GAG|GTAAACGCGA...CGCACTTTATAT/TTATATCTCATA...TATAG|TAC | 0 | 1 | 84.009 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);