introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
12 rows where transcript_id = 34480520
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Suggested facets: dinucleotide_pair, score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751129 | GT-AG | 0 | 1.000000099473604e-05 | 72 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 | 1 | 2221908 | 2221979 | Syncephalastrum racemosum 13706 | CAG|GTAATAACAA...TCATTCATGACT/CTCTCTTTCATT...TCTAG|CTC | 0 | 1 | 3.821 |
193751130 | GT-AG | 0 | 1.000000099473604e-05 | 62 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 | 2 | 2221665 | 2221726 | Syncephalastrum racemosum 13706 | CAG|GTACTATCCC...ATAACCTTATGG/TATAACCTTATG...TATAG|GAG | 1 | 1 | 8.171 |
193751131 | GT-AG | 0 | 0.0174168436525857 | 73 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 | 3 | 2221403 | 2221475 | Syncephalastrum racemosum 13706 | ATG|GTATGCATCG...ATATCCTCATCC/TATATCCTCATC...CACAG|ACG | 1 | 1 | 12.713 |
193751132 | GT-AG | 0 | 1.000000099473604e-05 | 62 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 | 4 | 2221139 | 2221200 | Syncephalastrum racemosum 13706 | CAG|GTTAGCGAAT...ACTTGCTTGATA/GATTCATTCATT...CACAG|CCT | 2 | 1 | 17.568 |
193751133 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 | 5 | 2220949 | 2221006 | Syncephalastrum racemosum 13706 | AAG|GTATGGGAAT...TCGCTCATATAT/GTGTCGCTCATA...TCTAG|AGC | 2 | 1 | 20.74 |
193751134 | GT-AG | 0 | 0.0001006295089911 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 | 6 | 2220701 | 2220760 | Syncephalastrum racemosum 13706 | TAG|GTAGACCTAT...TCTTGCTTACCG/TATATATTCATT...TTCAG|CCA | 1 | 1 | 25.258 |
193751135 | GT-AG | 0 | 5.399195512576801e-05 | 67 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 | 7 | 2220281 | 2220347 | Syncephalastrum racemosum 13706 | AAG|GTAAACTTGG...TCTCTCTCCACA/CTCGGACTGACA...ATCAG|AAA | 0 | 1 | 33.742 |
193751136 | GT-AG | 0 | 1.000000099473604e-05 | 57 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 | 8 | 2218719 | 2218775 | Syncephalastrum racemosum 13706 | TCG|GTAAGCAAAG...ACACTCATAACA/CGGACACTCATA...AACAG|GTT | 2 | 1 | 69.911 |
193751137 | GC-AG | 0 | 1.000000099473604e-05 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 | 9 | 2218588 | 2218639 | Syncephalastrum racemosum 13706 | GAG|GCAAGTCGTC...CTAATTTTAGTT/AGTATACTAATT...TGCAG|TTC | 0 | 1 | 71.81 |
193751138 | GT-AG | 0 | 2.560841631730316e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 | 10 | 2218406 | 2218459 | Syncephalastrum racemosum 13706 | GTT|GTAAGTCGAG...TTTATCTTAAGA/TTAAGACTCACG...TTCAG|ACA | 2 | 1 | 74.886 |
193751139 | GT-AG | 0 | 1.000000099473604e-05 | 47 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 | 11 | 2218068 | 2218114 | Syncephalastrum racemosum 13706 | AGG|GTAAATATCT...GCCTCTTTGTCG/GATCAACTAACA...TATAG|CAC | 2 | 1 | 81.879 |
193751140 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 | 12 | 2217712 | 2217770 | Syncephalastrum racemosum 13706 | AAA|GTAAGAAAGG...ACTGCCTTACCC/TACTGCCTTACC...TATAG|AAT | 2 | 1 | 89.017 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);