home / WtMTA

introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

12 rows where transcript_id = 34480520

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: dinucleotide_pair, score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751129 GT-AG 0 1.000000099473604e-05 72 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 1 2221908 2221979 Syncephalastrum racemosum 13706 CAG|GTAATAACAA...TCATTCATGACT/CTCTCTTTCATT...TCTAG|CTC 0 1 3.821
193751130 GT-AG 0 1.000000099473604e-05 62 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 2 2221665 2221726 Syncephalastrum racemosum 13706 CAG|GTACTATCCC...ATAACCTTATGG/TATAACCTTATG...TATAG|GAG 1 1 8.171
193751131 GT-AG 0 0.0174168436525857 73 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 3 2221403 2221475 Syncephalastrum racemosum 13706 ATG|GTATGCATCG...ATATCCTCATCC/TATATCCTCATC...CACAG|ACG 1 1 12.713
193751132 GT-AG 0 1.000000099473604e-05 62 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 4 2221139 2221200 Syncephalastrum racemosum 13706 CAG|GTTAGCGAAT...ACTTGCTTGATA/GATTCATTCATT...CACAG|CCT 2 1 17.568
193751133 GT-AG 0 1.000000099473604e-05 58 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 5 2220949 2221006 Syncephalastrum racemosum 13706 AAG|GTATGGGAAT...TCGCTCATATAT/GTGTCGCTCATA...TCTAG|AGC 2 1 20.74
193751134 GT-AG 0 0.0001006295089911 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 6 2220701 2220760 Syncephalastrum racemosum 13706 TAG|GTAGACCTAT...TCTTGCTTACCG/TATATATTCATT...TTCAG|CCA 1 1 25.258
193751135 GT-AG 0 5.399195512576801e-05 67 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 7 2220281 2220347 Syncephalastrum racemosum 13706 AAG|GTAAACTTGG...TCTCTCTCCACA/CTCGGACTGACA...ATCAG|AAA 0 1 33.742
193751136 GT-AG 0 1.000000099473604e-05 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 8 2218719 2218775 Syncephalastrum racemosum 13706 TCG|GTAAGCAAAG...ACACTCATAACA/CGGACACTCATA...AACAG|GTT 2 1 69.911
193751137 GC-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 9 2218588 2218639 Syncephalastrum racemosum 13706 GAG|GCAAGTCGTC...CTAATTTTAGTT/AGTATACTAATT...TGCAG|TTC 0 1 71.81
193751138 GT-AG 0 2.560841631730316e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 10 2218406 2218459 Syncephalastrum racemosum 13706 GTT|GTAAGTCGAG...TTTATCTTAAGA/TTAAGACTCACG...TTCAG|ACA 2 1 74.886
193751139 GT-AG 0 1.000000099473604e-05 47 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 11 2218068 2218114 Syncephalastrum racemosum 13706 AGG|GTAAATATCT...GCCTCTTTGTCG/GATCAACTAACA...TATAG|CAC 2 1 81.879
193751140 GT-AG 0 1.000000099473604e-05 59 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466290 34480520 12 2217712 2217770 Syncephalastrum racemosum 13706 AAA|GTAAGAAAGG...ACTGCCTTACCC/TACTGCCTTACC...TATAG|AAT 2 1 89.017

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 24.658ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)