introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
17 rows where transcript_id = 34480516
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751096 | GT-AG | 0 | 0.0024408029500136 | 56 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 | 1 | 4400128 | 4400183 | Syncephalastrum racemosum 13706 | CAG|GTACTCGTCC...TTTTCCTTACAC/CTTCTATTCACT...CACAG|CCA | 1 | 1 | 4.718 |
193751097 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 | 2 | 4400824 | 4400876 | Syncephalastrum racemosum 13706 | CGA|GTAAGTACTT...CTTTTCTTCTTG/GTATGTCTCACA...TATAG|CTG | 2 | 1 | 19.891 |
193751098 | GT-AG | 0 | 2.9734647570494488e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 | 3 | 4400958 | 4401010 | Syncephalastrum racemosum 13706 | GAG|GTAAGCTGGA...ATAACATTAATC/ATAACATTAATC...TGTAG|AAA | 2 | 1 | 21.811 |
193751099 | GT-AG | 0 | 0.0022139314977266 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 | 4 | 4401078 | 4401132 | Syncephalastrum racemosum 13706 | AAG|GTAACCACCG...TAGTGTTTAATC/TAGTGTTTAATC...TGTAG|TGG | 0 | 1 | 23.4 |
193751100 | GT-AG | 0 | 0.0001381982559666 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 | 5 | 4401466 | 4401517 | Syncephalastrum racemosum 13706 | GCG|GTACGTCGTT...ACTTCCATGACA/CTCTGCCTCATT...TGTAG|CTC | 0 | 1 | 31.294 |
193751101 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 | 6 | 4401868 | 4401928 | Syncephalastrum racemosum 13706 | CAA|GTTAGTACCT...TCTTTCGTATTT/CCGTGGCTGACC...CTTAG|AGC | 2 | 1 | 39.592 |
193751102 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 | 7 | 4402231 | 4402291 | Syncephalastrum racemosum 13706 | GGA|GTAAGTGCAG...TTTTTCTTCCTT/GACTGACTCACT...TTTAG|AAT | 1 | 1 | 46.752 |
193751103 | GT-AG | 0 | 1.000000099473604e-05 | 57 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 | 8 | 4402513 | 4402569 | Syncephalastrum racemosum 13706 | ATG|GTAAGCAAAG...ATGACTTTGCAC/ACGAGGCTGACG...TACAG|CCG | 0 | 1 | 51.991 |
193751104 | GT-AG | 0 | 1.000000099473604e-05 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 | 9 | 4402853 | 4402904 | Syncephalastrum racemosum 13706 | CTG|GTAAGTCGCC...ACGGCATTATTC/GCATTATTCACC...ATTAG|GAC | 1 | 1 | 58.701 |
193751105 | GT-AG | 0 | 1.000000099473604e-05 | 48 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 | 10 | 4402950 | 4402997 | Syncephalastrum racemosum 13706 | CAG|GTAAGAACTA...TGAGGCTGATCT/ATGAGGCTGATC...CCTAG|GTG | 1 | 1 | 59.768 |
193751106 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 | 11 | 4403043 | 4403091 | Syncephalastrum racemosum 13706 | GAG|GTAAGTCAAA...TTTTTCTGAATC/CTTTTTCTGAAT...TATAG|GTG | 1 | 1 | 60.835 |
193751107 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 | 12 | 4403131 | 4403181 | Syncephalastrum racemosum 13706 | GAG|GTAAGCCCAG...TTTTCCTTTTTT/CTTTTTTCCACT...TTTAG|GCG | 1 | 1 | 61.759 |
193751108 | GT-AG | 0 | 8.441344414760202e-05 | 65 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 | 13 | 4403533 | 4403597 | Syncephalastrum racemosum 13706 | TCA|GTAAGTTTCC...CCATGTATGACA/CCAGTGCTCACG...TGTAG|ACA | 1 | 1 | 70.081 |
193751109 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 | 14 | 4403903 | 4403956 | Syncephalastrum racemosum 13706 | AAG|GTACGTAAAA...GATGCTTAAACA/GCGATGCTTAAA...TTTAG|AAC | 0 | 1 | 77.312 |
193751110 | GT-AG | 0 | 2.921074068799686e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 | 15 | 4404026 | 4404075 | Syncephalastrum racemosum 13706 | GGC|GTAAGTGTCA...GCGTCTTTGTCC/CTAGTGCTAATC...AACAG|CTT | 0 | 1 | 78.947 |
193751111 | GT-AG | 0 | 2.038311941702289e-05 | 63 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 | 16 | 4404160 | 4404222 | Syncephalastrum racemosum 13706 | AAG|GTAAGCCCTG...TGGTCCTTGAGT/TCTTCTCTGATA...TCTAG|CTC | 0 | 1 | 80.939 |
193751112 | GT-AG | 0 | 0.0001391707354408 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 | 17 | 4404356 | 4404408 | Syncephalastrum racemosum 13706 | GCA|GTAAGTAGTA...CACTCTTTATCT/CTTTATCTCACG...TCTAG|TTA | 1 | 1 | 84.092 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);