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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

17 rows where transcript_id = 34480516

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751096 GT-AG 0 0.0024408029500136 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 1 4400128 4400183 Syncephalastrum racemosum 13706 CAG|GTACTCGTCC...TTTTCCTTACAC/CTTCTATTCACT...CACAG|CCA 1 1 4.718
193751097 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 2 4400824 4400876 Syncephalastrum racemosum 13706 CGA|GTAAGTACTT...CTTTTCTTCTTG/GTATGTCTCACA...TATAG|CTG 2 1 19.891
193751098 GT-AG 0 2.9734647570494488e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 3 4400958 4401010 Syncephalastrum racemosum 13706 GAG|GTAAGCTGGA...ATAACATTAATC/ATAACATTAATC...TGTAG|AAA 2 1 21.811
193751099 GT-AG 0 0.0022139314977266 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 4 4401078 4401132 Syncephalastrum racemosum 13706 AAG|GTAACCACCG...TAGTGTTTAATC/TAGTGTTTAATC...TGTAG|TGG 0 1 23.4
193751100 GT-AG 0 0.0001381982559666 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 5 4401466 4401517 Syncephalastrum racemosum 13706 GCG|GTACGTCGTT...ACTTCCATGACA/CTCTGCCTCATT...TGTAG|CTC 0 1 31.294
193751101 GT-AG 0 1.000000099473604e-05 61 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 6 4401868 4401928 Syncephalastrum racemosum 13706 CAA|GTTAGTACCT...TCTTTCGTATTT/CCGTGGCTGACC...CTTAG|AGC 2 1 39.592
193751102 GT-AG 0 1.000000099473604e-05 61 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 7 4402231 4402291 Syncephalastrum racemosum 13706 GGA|GTAAGTGCAG...TTTTTCTTCCTT/GACTGACTCACT...TTTAG|AAT 1 1 46.752
193751103 GT-AG 0 1.000000099473604e-05 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 8 4402513 4402569 Syncephalastrum racemosum 13706 ATG|GTAAGCAAAG...ATGACTTTGCAC/ACGAGGCTGACG...TACAG|CCG 0 1 51.991
193751104 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 9 4402853 4402904 Syncephalastrum racemosum 13706 CTG|GTAAGTCGCC...ACGGCATTATTC/GCATTATTCACC...ATTAG|GAC 1 1 58.701
193751105 GT-AG 0 1.000000099473604e-05 48 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 10 4402950 4402997 Syncephalastrum racemosum 13706 CAG|GTAAGAACTA...TGAGGCTGATCT/ATGAGGCTGATC...CCTAG|GTG 1 1 59.768
193751106 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 11 4403043 4403091 Syncephalastrum racemosum 13706 GAG|GTAAGTCAAA...TTTTTCTGAATC/CTTTTTCTGAAT...TATAG|GTG 1 1 60.835
193751107 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 12 4403131 4403181 Syncephalastrum racemosum 13706 GAG|GTAAGCCCAG...TTTTCCTTTTTT/CTTTTTTCCACT...TTTAG|GCG 1 1 61.759
193751108 GT-AG 0 8.441344414760202e-05 65 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 13 4403533 4403597 Syncephalastrum racemosum 13706 TCA|GTAAGTTTCC...CCATGTATGACA/CCAGTGCTCACG...TGTAG|ACA 1 1 70.081
193751109 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 14 4403903 4403956 Syncephalastrum racemosum 13706 AAG|GTACGTAAAA...GATGCTTAAACA/GCGATGCTTAAA...TTTAG|AAC 0 1 77.312
193751110 GT-AG 0 2.921074068799686e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 15 4404026 4404075 Syncephalastrum racemosum 13706 GGC|GTAAGTGTCA...GCGTCTTTGTCC/CTAGTGCTAATC...AACAG|CTT 0 1 78.947
193751111 GT-AG 0 2.038311941702289e-05 63 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 16 4404160 4404222 Syncephalastrum racemosum 13706 AAG|GTAAGCCCTG...TGGTCCTTGAGT/TCTTCTCTGATA...TCTAG|CTC 0 1 80.939
193751112 GT-AG 0 0.0001391707354408 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA65527 34480516 17 4404356 4404408 Syncephalastrum racemosum 13706 GCA|GTAAGTAGTA...CACTCTTTATCT/CTTTATCTCACG...TCTAG|TTA 1 1 84.092

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 22.788ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)