introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
12 rows where transcript_id = 34480515
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Suggested facets: dinucleotide_pair, score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751084 | GT-AG | 0 | 0.00023926364565 | 57 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481095 34480515 | 1 | 83681 | 83737 | Syncephalastrum racemosum 13706 | AGA|GTAAACTATA...AGTTATTCGACA/CAAAACCTCATG...TTTAG|GTT | 1 | 1 | 2.283 |
193751085 | GT-AG | 0 | 1.000000099473604e-05 | 71 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481095 34480515 | 2 | 83464 | 83534 | Syncephalastrum racemosum 13706 | AGA|GTAAGAAGAA...TTTACCATGATT/AGGTGATTAATT...TGCAG|AAT | 0 | 1 | 5.72 |
193751086 | GT-AG | 0 | 1.000000099473604e-05 | 87 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481095 34480515 | 3 | 83116 | 83202 | Syncephalastrum racemosum 13706 | GAC|GTGAGTTTTG...CTCTCTTTGTCC/TGTAGGCTCATA...TGCAG|GGC | 0 | 1 | 11.864 |
193751087 | GT-AG | 0 | 0.0059660878579122 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481095 34480515 | 4 | 82994 | 83045 | Syncephalastrum racemosum 13706 | ATG|GTAACCAGCA...CGAACCATGACT/TTTTGGCTCACC...CATAG|ATT | 1 | 1 | 13.512 |
193751088 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481095 34480515 | 5 | 82811 | 82859 | Syncephalastrum racemosum 13706 | CCT|GTAAGTACGG...GCCTCTTTTATA/AGTCTACTCACC...TCTAG|CTC | 0 | 1 | 16.667 |
193751089 | GT-AG | 0 | 1.3544853486021592e-05 | 65 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481095 34480515 | 6 | 82641 | 82705 | Syncephalastrum racemosum 13706 | TAT|GTAAATAACG...CGCGTCTAAATG/ACTTCGCTCACA...ATTAG|ATC | 0 | 1 | 19.138 |
193751090 | GT-AG | 0 | 1.000000099473604e-05 | 57 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481095 34480515 | 7 | 82291 | 82347 | Syncephalastrum racemosum 13706 | CAG|GTACAGGAGG...TGTTCATTCTTT/TAGGTGTTCATT...GCTAG|GTA | 2 | 1 | 26.036 |
193751091 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481095 34480515 | 8 | 81551 | 81610 | Syncephalastrum racemosum 13706 | GAG|GTAATGACGA...TGTGAGTTAACT/TGTGAGTTAACT...AATAG|GCA | 1 | 1 | 42.043 |
193751092 | GT-AG | 0 | 1.000000099473604e-05 | 48 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481095 34480515 | 9 | 80373 | 80420 | Syncephalastrum racemosum 13706 | GGG|GTAAGTTGAA...CTTCTCATAGTT/AGCCTTCTCATA...ATTAG|TAT | 0 | 1 | 68.644 |
193751093 | GT-AG | 0 | 0.0001595068773096 | 59 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481095 34480515 | 10 | 79636 | 79694 | Syncephalastrum racemosum 13706 | GCT|GTAAGTTGAA...CTAACGTTGAAT/TGGAAGCTAACG...GAAAG|ACT | 0 | 1 | 84.605 |
193751094 | GC-AG | 0 | 1.000000099473604e-05 | 56 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481095 34480515 | 11 | 79364 | 79419 | Syncephalastrum racemosum 13706 | AAG|GCAAGTTGCT...TATTCTTTTGCG/GGAAAACTGACA...TCTAG|TTT | 0 | 1 | 89.689 |
193751095 | GT-AG | 0 | 1.000000099473604e-05 | 57 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481095 34480515 | 12 | 79103 | 79159 | Syncephalastrum racemosum 13706 | GAG|GTAAAGAATA...CGGTACTGAACA/TCGGTACTGAAC...AAAAG|ATC | 0 | 1 | 94.492 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);