introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
21 rows where transcript_id = 34480510
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751039 | GT-AG | 0 | 0.0007209342607285 | 65 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 1 | 4494451 | 4494515 | Syncephalastrum racemosum 13706 | GCG|GTATGAATTG...CTGTCATTGACT/CTGTCATTGACT...ATTAG|CTG | 1 | 1 | 4.274 |
193751040 | GT-AG | 0 | 0.0001317604284135 | 56 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 2 | 4494923 | 4494978 | Syncephalastrum racemosum 13706 | GAT|GTAAGCACTG...CGATACTTAACG/ACGATACTTAAC...TATAG|TAC | 0 | 1 | 13.428 |
193751041 | GT-AG | 0 | 1.000000099473604e-05 | 48 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 3 | 4495085 | 4495132 | Syncephalastrum racemosum 13706 | ATG|GTAAGTCATT...GAGGGTTTGACA/GCGATATTGACA...TATAG|CCA | 1 | 1 | 15.812 |
193751042 | GT-AG | 0 | 1.000000099473604e-05 | 46 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 4 | 4495767 | 4495812 | Syncephalastrum racemosum 13706 | AAA|GTAAGTCCAT...CGCTTCCTGACG/CGCTTCCTGACG...ATCAG|ATG | 2 | 1 | 30.072 |
193751043 | GT-AG | 0 | 1.000000099473604e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 5 | 4495961 | 4496010 | Syncephalastrum racemosum 13706 | CTA|GTAAGCACAT...TATGTATTCACC/TATGTATTCACC...CATAG|AAC | 0 | 1 | 33.401 |
193751044 | GT-AG | 0 | 6.088717421559507e-05 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 6 | 4496182 | 4496236 | Syncephalastrum racemosum 13706 | CAG|GTACATAGTT...GTATCCTTCTCC/TCAAAGCTGACG...TCCAG|ATT | 0 | 1 | 37.247 |
193751045 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 7 | 4496339 | 4496398 | Syncephalastrum racemosum 13706 | CAA|GTGAGTCTTG...TGTTCCATACTA/TCCATACTAATA...TTTAG|TGC | 0 | 1 | 39.541 |
193751046 | GT-AG | 0 | 0.0037960902568529 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 8 | 4496566 | 4496620 | Syncephalastrum racemosum 13706 | CAG|GTATTTTGTA...CTGACTTGAACA/AGTTCGCTCACG...GCCAG|ATT | 2 | 1 | 43.297 |
193751047 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 9 | 4496823 | 4496871 | Syncephalastrum racemosum 13706 | AAT|GTAAGCGAAT...GTCCCTTTTACT/CTTTTACTCACC...AATAG|GTA | 0 | 1 | 47.841 |
193751048 | GT-AG | 0 | 0.0004898816512338 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 10 | 4497019 | 4497071 | Syncephalastrum racemosum 13706 | ATG|GTAACTAGTA...AGCCCCTTTACA/TCCAGTCTCACT...GGTAG|GAT | 0 | 1 | 51.147 |
193751049 | GT-AG | 0 | 1.3817068089200612e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 11 | 4497387 | 4497439 | Syncephalastrum racemosum 13706 | CAG|GTACGTCTCG...GGTGATTTGATG/ATAGATCTGATG...TTTAG|ACT | 0 | 1 | 58.232 |
193751050 | GT-AG | 0 | 1.000000099473604e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 12 | 4497683 | 4497732 | Syncephalastrum racemosum 13706 | CGG|GTAAAGTGTT...TTGTCTCTGTTG/CAAATGCTAACA...TGTAG|CGT | 0 | 1 | 63.698 |
193751051 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 13 | 4497868 | 4497918 | Syncephalastrum racemosum 13706 | GAG|GTAAGATACA...GATCACTTATCT/TTTTTGCTGATC...TAAAG|CTC | 0 | 1 | 66.734 |
193751052 | GT-AG | 0 | 0.0030447156613579 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 14 | 4498013 | 4498061 | Syncephalastrum racemosum 13706 | TCA|GTACGTCTTA...AATGCCTGAAAT/ATCTGGCTAACC...CTTAG|AAA | 1 | 1 | 68.848 |
193751053 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 15 | 4498223 | 4498280 | Syncephalastrum racemosum 13706 | AAG|GTAAGATCAT...AATTTCTCACTA/GAATTTCTCACT...GATAG|GGT | 0 | 1 | 72.47 |
193751054 | GT-AG | 0 | 1.000000099473604e-05 | 47 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 16 | 4498360 | 4498406 | Syncephalastrum racemosum 13706 | TCA|GTAAGTCGAA...CTCATCTTGTTC/CACAGACTCATC...CATAG|GTT | 1 | 1 | 74.247 |
193751055 | GT-AG | 0 | 0.0001439891482307 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 17 | 4498572 | 4498622 | Syncephalastrum racemosum 13706 | AAG|GTATTGATGA...GTTTACTTACCT/CGTTTACTTACC...TACAG|GTA | 1 | 1 | 77.958 |
193751056 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 18 | 4498696 | 4498753 | Syncephalastrum racemosum 13706 | AAG|GTATGAAGAT...GATACTTTATGC/TTTATGCTCATT...TGCAG|CGT | 2 | 1 | 79.6 |
193751057 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 19 | 4498890 | 4498944 | Syncephalastrum racemosum 13706 | CTG|GTAAGCCAGG...AGCGACTTATGT/CAGCGACTTATG...TCCAG|TGC | 0 | 1 | 82.659 |
193751058 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 20 | 4499275 | 4499328 | Syncephalastrum racemosum 13706 | ATG|GTAAGTCGGC...AAAATCTTACTT/ATCTTACTTACC...TTCAG|CCC | 0 | 1 | 90.081 |
193751059 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 | 21 | 4499607 | 4499666 | Syncephalastrum racemosum 13706 | TAG|GTAAAGTAGA...ATGTATTTACTC/TATGTATTTACT...TTTAG|CCA | 2 | 1 | 96.334 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);