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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

21 rows where transcript_id = 34480510

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751039 GT-AG 0 0.0007209342607285 65 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 1 4494451 4494515 Syncephalastrum racemosum 13706 GCG|GTATGAATTG...CTGTCATTGACT/CTGTCATTGACT...ATTAG|CTG 1 1 4.274
193751040 GT-AG 0 0.0001317604284135 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 2 4494923 4494978 Syncephalastrum racemosum 13706 GAT|GTAAGCACTG...CGATACTTAACG/ACGATACTTAAC...TATAG|TAC 0 1 13.428
193751041 GT-AG 0 1.000000099473604e-05 48 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 3 4495085 4495132 Syncephalastrum racemosum 13706 ATG|GTAAGTCATT...GAGGGTTTGACA/GCGATATTGACA...TATAG|CCA 1 1 15.812
193751042 GT-AG 0 1.000000099473604e-05 46 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 4 4495767 4495812 Syncephalastrum racemosum 13706 AAA|GTAAGTCCAT...CGCTTCCTGACG/CGCTTCCTGACG...ATCAG|ATG 2 1 30.072
193751043 GT-AG 0 1.000000099473604e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 5 4495961 4496010 Syncephalastrum racemosum 13706 CTA|GTAAGCACAT...TATGTATTCACC/TATGTATTCACC...CATAG|AAC 0 1 33.401
193751044 GT-AG 0 6.088717421559507e-05 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 6 4496182 4496236 Syncephalastrum racemosum 13706 CAG|GTACATAGTT...GTATCCTTCTCC/TCAAAGCTGACG...TCCAG|ATT 0 1 37.247
193751045 GT-AG 0 1.000000099473604e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 7 4496339 4496398 Syncephalastrum racemosum 13706 CAA|GTGAGTCTTG...TGTTCCATACTA/TCCATACTAATA...TTTAG|TGC 0 1 39.541
193751046 GT-AG 0 0.0037960902568529 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 8 4496566 4496620 Syncephalastrum racemosum 13706 CAG|GTATTTTGTA...CTGACTTGAACA/AGTTCGCTCACG...GCCAG|ATT 2 1 43.297
193751047 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 9 4496823 4496871 Syncephalastrum racemosum 13706 AAT|GTAAGCGAAT...GTCCCTTTTACT/CTTTTACTCACC...AATAG|GTA 0 1 47.841
193751048 GT-AG 0 0.0004898816512338 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 10 4497019 4497071 Syncephalastrum racemosum 13706 ATG|GTAACTAGTA...AGCCCCTTTACA/TCCAGTCTCACT...GGTAG|GAT 0 1 51.147
193751049 GT-AG 0 1.3817068089200612e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 11 4497387 4497439 Syncephalastrum racemosum 13706 CAG|GTACGTCTCG...GGTGATTTGATG/ATAGATCTGATG...TTTAG|ACT 0 1 58.232
193751050 GT-AG 0 1.000000099473604e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 12 4497683 4497732 Syncephalastrum racemosum 13706 CGG|GTAAAGTGTT...TTGTCTCTGTTG/CAAATGCTAACA...TGTAG|CGT 0 1 63.698
193751051 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 13 4497868 4497918 Syncephalastrum racemosum 13706 GAG|GTAAGATACA...GATCACTTATCT/TTTTTGCTGATC...TAAAG|CTC 0 1 66.734
193751052 GT-AG 0 0.0030447156613579 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 14 4498013 4498061 Syncephalastrum racemosum 13706 TCA|GTACGTCTTA...AATGCCTGAAAT/ATCTGGCTAACC...CTTAG|AAA 1 1 68.848
193751053 GT-AG 0 1.000000099473604e-05 58 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 15 4498223 4498280 Syncephalastrum racemosum 13706 AAG|GTAAGATCAT...AATTTCTCACTA/GAATTTCTCACT...GATAG|GGT 0 1 72.47
193751054 GT-AG 0 1.000000099473604e-05 47 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 16 4498360 4498406 Syncephalastrum racemosum 13706 TCA|GTAAGTCGAA...CTCATCTTGTTC/CACAGACTCATC...CATAG|GTT 1 1 74.247
193751055 GT-AG 0 0.0001439891482307 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 17 4498572 4498622 Syncephalastrum racemosum 13706 AAG|GTATTGATGA...GTTTACTTACCT/CGTTTACTTACC...TACAG|GTA 1 1 77.958
193751056 GT-AG 0 1.000000099473604e-05 58 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 18 4498696 4498753 Syncephalastrum racemosum 13706 AAG|GTATGAAGAT...GATACTTTATGC/TTTATGCTCATT...TGCAG|CGT 2 1 79.6
193751057 GT-AG 0 1.000000099473604e-05 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 19 4498890 4498944 Syncephalastrum racemosum 13706 CTG|GTAAGCCAGG...AGCGACTTATGT/CAGCGACTTATG...TCCAG|TGC 0 1 82.659
193751058 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 20 4499275 4499328 Syncephalastrum racemosum 13706 ATG|GTAAGTCGGC...AAAATCTTACTT/ATCTTACTTACC...TTCAG|CCC 0 1 90.081
193751059 GT-AG 0 1.000000099473604e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520958 34480510 21 4499607 4499666 Syncephalastrum racemosum 13706 TAG|GTAAAGTAGA...ATGTATTTACTC/TATGTATTTACT...TTTAG|CCA 2 1 96.334

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 30.685ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)