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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

19 rows where transcript_id = 34480509

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751020 GT-AG 0 0.0049274935727701 72 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 1 2249483 2249554 Syncephalastrum racemosum 13706 CCA|GTAAGCTTGT...GCGTTCTGGACT/TCTGGACTCAAA...TGCAG|AGA 1 1 8.896
193751021 GT-AG 0 1.7710782213355386e-05 47 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 2 2249263 2249309 Syncephalastrum racemosum 13706 TGG|GTAGGCGTAA...CGCCCTCTAATT/CGCCCTCTAATT...TTTAG|CTT 0 1 12.715
193751022 GT-AG 0 9.523143386764572e-05 76 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 3 2249120 2249195 Syncephalastrum racemosum 13706 AAG|GTACTATAAA...GCATTCTTAATC/CTTAGATTGATA...ATTAG|TAA 1 1 14.194
193751023 GT-AG 0 1.732813826264917e-05 48 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 4 2248860 2248907 Syncephalastrum racemosum 13706 GAT|GTAGGTCCTT...TACTTTTTAAGT/TACTTTTTAAGT...TTTAG|GAT 0 1 18.874
193751024 GT-AG 0 1.000000099473604e-05 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 5 2248070 2248124 Syncephalastrum racemosum 13706 GCG|GTAAGCGGAA...ATAGTCTCGATA/TCGATATTTATA...ACCAG|ACT 0 1 35.099
193751025 GT-AG 0 0.0322492399775528 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 6 2247920 2247973 Syncephalastrum racemosum 13706 AAG|GTATGCTATC...CATATTTTAAAC/CATATTTTAAAC...TTCAG|AAA 0 1 37.219
193751026 GT-AG 0 0.0001910277237651 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 7 2247761 2247817 Syncephalastrum racemosum 13706 AAG|GTACGCTCAT...CTAACTTGAACC/GGAAATCTAACT...TTTAG|CGC 0 1 39.47
193751027 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 8 2247529 2247577 Syncephalastrum racemosum 13706 CAT|GTGAGTCATA...CCATTCTTATCT/ACCATTCTTATC...AGTAG|AAC 0 1 43.51
193751028 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 9 2247377 2247430 Syncephalastrum racemosum 13706 ATG|GTAAGATCCG...CACTCCTTTGCT/GAGATATTAACA...TCCAG|CGG 2 1 45.673
193751029 GT-AG 0 3.4419041217748416e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 10 2247243 2247291 Syncephalastrum racemosum 13706 CAA|GTAAGCACCA...ACCACTTTACTA/ACTTTACTAAGT...TATAG|CCA 0 1 47.55
193751030 GT-AG 0 5.164696556626589e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 11 2247035 2247086 Syncephalastrum racemosum 13706 ACG|GTAGACCTCG...AGAGACTGAGCT/GAGAGACTGAGC...CTTAG|GGA 0 1 50.993
193751031 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 12 2246838 2246888 Syncephalastrum racemosum 13706 GAG|GTAAAAACGA...GATGCCTAATTA/AAATGATTCATA...TTAAG|GGT 2 1 54.216
193751032 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 13 2246651 2246703 Syncephalastrum racemosum 13706 CTG|GTATTAGGAT...CCGATCTAATTC/CCCGATCTAATT...TATAG|GCT 1 1 57.174
193751033 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 14 2246530 2246593 Syncephalastrum racemosum 13706 GAG|GTCAGTGAAT...GATTCCATATAG/CTTGCGCTCAAT...TTTAG|ATC 1 1 58.433
193751034 GT-AG 0 3.195963631530518e-05 58 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 15 2245895 2245952 Syncephalastrum racemosum 13706 CAG|GTACGTTAGA...TGCATCTAAATC/CTGCATCTAAAT...GTTAG|CTA 2 1 71.17
193751035 GT-AG 0 0.0001778744828969 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 16 2245701 2245755 Syncephalastrum racemosum 13706 CAT|GTAATTTGGC...GTGTCCCTGACC/GCGTTATTGATA...TGTAG|ATG 0 1 74.238
193751036 GT-AG 0 0.0003051137369029 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 17 2245487 2245538 Syncephalastrum racemosum 13706 GAA|GTAATTATCA...TTAGCCTTACTT/TTTAGCCTTACT...TGCAG|GTA 0 1 77.815
193751037 GT-AG 0 0.005329386955828 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 18 2245201 2245257 Syncephalastrum racemosum 13706 ACG|GTATATTATA...TTAACTCTAGTT/TGTTGGCTCACT...TGTAG|CTG 1 1 82.87
193751038 GT-AG 0 1.000000099473604e-05 69 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 19 2244479 2244547 Syncephalastrum racemosum 13706 CTG|GTAAGTGATT...TTGCTTATGACC/ATTTTGCTTATG...TGTAG|AAT 0 1 97.285

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 25.13ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)