introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
19 rows where transcript_id = 34480509
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751020 | GT-AG | 0 | 0.0049274935727701 | 72 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 1 | 2249483 | 2249554 | Syncephalastrum racemosum 13706 | CCA|GTAAGCTTGT...GCGTTCTGGACT/TCTGGACTCAAA...TGCAG|AGA | 1 | 1 | 8.896 |
193751021 | GT-AG | 0 | 1.7710782213355386e-05 | 47 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 2 | 2249263 | 2249309 | Syncephalastrum racemosum 13706 | TGG|GTAGGCGTAA...CGCCCTCTAATT/CGCCCTCTAATT...TTTAG|CTT | 0 | 1 | 12.715 |
193751022 | GT-AG | 0 | 9.523143386764572e-05 | 76 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 3 | 2249120 | 2249195 | Syncephalastrum racemosum 13706 | AAG|GTACTATAAA...GCATTCTTAATC/CTTAGATTGATA...ATTAG|TAA | 1 | 1 | 14.194 |
193751023 | GT-AG | 0 | 1.732813826264917e-05 | 48 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 4 | 2248860 | 2248907 | Syncephalastrum racemosum 13706 | GAT|GTAGGTCCTT...TACTTTTTAAGT/TACTTTTTAAGT...TTTAG|GAT | 0 | 1 | 18.874 |
193751024 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 5 | 2248070 | 2248124 | Syncephalastrum racemosum 13706 | GCG|GTAAGCGGAA...ATAGTCTCGATA/TCGATATTTATA...ACCAG|ACT | 0 | 1 | 35.099 |
193751025 | GT-AG | 0 | 0.0322492399775528 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 6 | 2247920 | 2247973 | Syncephalastrum racemosum 13706 | AAG|GTATGCTATC...CATATTTTAAAC/CATATTTTAAAC...TTCAG|AAA | 0 | 1 | 37.219 |
193751026 | GT-AG | 0 | 0.0001910277237651 | 57 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 7 | 2247761 | 2247817 | Syncephalastrum racemosum 13706 | AAG|GTACGCTCAT...CTAACTTGAACC/GGAAATCTAACT...TTTAG|CGC | 0 | 1 | 39.47 |
193751027 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 8 | 2247529 | 2247577 | Syncephalastrum racemosum 13706 | CAT|GTGAGTCATA...CCATTCTTATCT/ACCATTCTTATC...AGTAG|AAC | 0 | 1 | 43.51 |
193751028 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 9 | 2247377 | 2247430 | Syncephalastrum racemosum 13706 | ATG|GTAAGATCCG...CACTCCTTTGCT/GAGATATTAACA...TCCAG|CGG | 2 | 1 | 45.673 |
193751029 | GT-AG | 0 | 3.4419041217748416e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 10 | 2247243 | 2247291 | Syncephalastrum racemosum 13706 | CAA|GTAAGCACCA...ACCACTTTACTA/ACTTTACTAAGT...TATAG|CCA | 0 | 1 | 47.55 |
193751030 | GT-AG | 0 | 5.164696556626589e-05 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 11 | 2247035 | 2247086 | Syncephalastrum racemosum 13706 | ACG|GTAGACCTCG...AGAGACTGAGCT/GAGAGACTGAGC...CTTAG|GGA | 0 | 1 | 50.993 |
193751031 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 12 | 2246838 | 2246888 | Syncephalastrum racemosum 13706 | GAG|GTAAAAACGA...GATGCCTAATTA/AAATGATTCATA...TTAAG|GGT | 2 | 1 | 54.216 |
193751032 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 13 | 2246651 | 2246703 | Syncephalastrum racemosum 13706 | CTG|GTATTAGGAT...CCGATCTAATTC/CCCGATCTAATT...TATAG|GCT | 1 | 1 | 57.174 |
193751033 | GT-AG | 0 | 1.000000099473604e-05 | 64 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 14 | 2246530 | 2246593 | Syncephalastrum racemosum 13706 | GAG|GTCAGTGAAT...GATTCCATATAG/CTTGCGCTCAAT...TTTAG|ATC | 1 | 1 | 58.433 |
193751034 | GT-AG | 0 | 3.195963631530518e-05 | 58 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 15 | 2245895 | 2245952 | Syncephalastrum racemosum 13706 | CAG|GTACGTTAGA...TGCATCTAAATC/CTGCATCTAAAT...GTTAG|CTA | 2 | 1 | 71.17 |
193751035 | GT-AG | 0 | 0.0001778744828969 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 16 | 2245701 | 2245755 | Syncephalastrum racemosum 13706 | CAT|GTAATTTGGC...GTGTCCCTGACC/GCGTTATTGATA...TGTAG|ATG | 0 | 1 | 74.238 |
193751036 | GT-AG | 0 | 0.0003051137369029 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 17 | 2245487 | 2245538 | Syncephalastrum racemosum 13706 | GAA|GTAATTATCA...TTAGCCTTACTT/TTTAGCCTTACT...TGCAG|GTA | 0 | 1 | 77.815 |
193751037 | GT-AG | 0 | 0.005329386955828 | 57 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 18 | 2245201 | 2245257 | Syncephalastrum racemosum 13706 | ACG|GTATATTATA...TTAACTCTAGTT/TGTTGGCTCACT...TGTAG|CTG | 1 | 1 | 82.87 |
193751038 | GT-AG | 0 | 1.000000099473604e-05 | 69 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA31232 34480509 | 19 | 2244479 | 2244547 | Syncephalastrum racemosum 13706 | CTG|GTAAGTGATT...TTGCTTATGACC/ATTTTGCTTATG...TGTAG|AAT | 0 | 1 | 97.285 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);