introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
5 rows where transcript_id = 34480507
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Suggested facets: phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751014 | GT-AG | 0 | 2.5653154997460176e-05 | 65 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA19122 34480507 | 2 | 1395028 | 1395092 | Syncephalastrum racemosum 13706 | AAG|GTAGATTGAT...ATCCACTTAACA/ATTAGTCTCATG...GCTAG|GTA | 1 | 1 | 5.516 |
193751015 | GT-AG | 0 | 0.2698125506160513 | 56 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA19122 34480507 | 3 | 1395563 | 1395618 | Syncephalastrum racemosum 13706 | CGG|GTAACCTATT...TATTCATTAACT/ACTTTATTCATT...ATCAG|TTA | 0 | 1 | 15.373 |
193751016 | GT-AG | 0 | 0.0005686042497459 | 59 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA19122 34480507 | 4 | 1396873 | 1396931 | Syncephalastrum racemosum 13706 | CCT|GTAAGTTCTT...GATGTCTTACCA/TACTTATTCATG...TCTAG|GCG | 0 | 1 | 41.674 |
193751017 | GT-AG | 0 | 0.0002814536314161 | 63 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA19122 34480507 | 5 | 1397076 | 1397138 | Syncephalastrum racemosum 13706 | TTT|GTAAGTCTTA...TATACCTTATAC/CTTATACTGAAC...CATAG|GCT | 0 | 1 | 44.694 |
193757518 | GT-AG | 0 | 0.0016233280890359 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA19122 34480507 | 1 | 1394894 | 1394953 | Syncephalastrum racemosum 13706 | CGG|GTACTTTTAA...CTGTTCTTACAG/TCTGTTCTTACA...TCTAG|TCA | 0 | 4.551 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);