introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 34480506
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751005 | GT-AG | 0 | 0.0011101529850511 | 72 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481844 34480506 | 1 | 1257251 | 1257322 | Syncephalastrum racemosum 13706 | CCT|GTAAAGTTTC...GTCTTTTTGACA/GTCATTTTCATC...GATAG|TTG | 0 | 1 | 4.283 |
193751006 | GT-AG | 0 | 1.000000099473604e-05 | 89 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481844 34480506 | 2 | 1256781 | 1256869 | Syncephalastrum racemosum 13706 | GAG|GTAGAGTATT...GTATTGCTAACA/GTATTGCTAACA...TCTAG|ATG | 0 | 1 | 12.524 |
193751007 | GT-AG | 0 | 1.000000099473604e-05 | 99 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481844 34480506 | 3 | 1256544 | 1256642 | Syncephalastrum racemosum 13706 | CAG|GTAAAGTTAA...CAGTACATATCA/AGGGCGCTGATC...TTTAG|CAT | 0 | 1 | 15.509 |
193751008 | GT-AG | 0 | 4.4417868162093815e-05 | 44 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481844 34480506 | 4 | 1256417 | 1256460 | Syncephalastrum racemosum 13706 | TCT|GTCATTCTCC...ATTTCGTTACTG/TATTTCGTTACT...CTGAG|ACA | 2 | 1 | 17.305 |
193751009 | GT-AG | 0 | 1.000000099473604e-05 | 72 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481844 34480506 | 5 | 1256296 | 1256367 | Syncephalastrum racemosum 13706 | AGG|GTAAATTGAG...AGAACGTTAACC/CGTTCTCTCATG...ATTAG|GGT | 0 | 1 | 18.365 |
193751010 | GT-AG | 0 | 1.000000099473604e-05 | 62 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481844 34480506 | 6 | 1256042 | 1256103 | Syncephalastrum racemosum 13706 | CAG|GTACGTCTTG...ACGCGCTTATAC/AACGCGCTTATA...CTTAG|GCA | 0 | 1 | 22.518 |
193751011 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481844 34480506 | 7 | 1255637 | 1255690 | Syncephalastrum racemosum 13706 | GAG|GTAAGACAAA...GGTTGATTAATC/CTGTTGTTCATG...GGTAG|CCT | 0 | 1 | 30.11 |
193751012 | GT-AG | 0 | 0.0009991327953816 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481844 34480506 | 8 | 1255283 | 1255335 | Syncephalastrum racemosum 13706 | TTG|GTATGTGTCT...CATCTTTTATTG/TCATCTTTTATT...TGCAG|GCC | 1 | 1 | 36.621 |
193751013 | GT-AG | 0 | 0.0001249577991318 | 46 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481844 34480506 | 9 | 1255042 | 1255087 | Syncephalastrum racemosum 13706 | AAG|GTACGCATTC...GTCCTCTCACCT/TGTCCTCTCACC...TCCAG|GCG | 1 | 1 | 40.839 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);