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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

32 rows where transcript_id = 34480504

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Suggested facets: dinucleotide_pair, score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193750970 GT-AG 0 58.67674579771504 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 1 3386370 3386425 Syncephalastrum racemosum 13706 AAG|GTATCCTTTT...TCTTCCCTAATC/TCTTCCCTAATC...CTCAG|TCT 2 1 1.845
193750971 GT-AG 0 0.5478179352179712 101 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 2 3386554 3386654 Syncephalastrum racemosum 13706 CCC|GTATGTTTGC...TGATTTTTGATG/TGATTTTTGATG...TTTAG|AGC 1 1 4.59
193750972 GT-AG 0 1.000000099473604e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 3 3386776 3386835 Syncephalastrum racemosum 13706 CAG|GTACGGCGTT...GCCCTCATATCA/AGCGCCCTCATA...CGTAG|CAC 2 1 7.186
193750973 GT-AG 0 1.6178185899257447e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 4 3386921 3386980 Syncephalastrum racemosum 13706 AAG|GTAGACACCC...TCACACTTACCG/CATACATTCATC...TGCAG|ATT 0 1 9.009
193750974 GT-AG 0 1.000000099473604e-05 66 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 5 3387083 3387148 Syncephalastrum racemosum 13706 GAG|GTTAGAAGAG...ATCCATATAACC/ATCCATATAACC...TTTAG|GAC 0 1 11.197
193750975 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 6 3387257 3387308 Syncephalastrum racemosum 13706 ATG|GTATGAATAT...CTAGTCATACAT/TACATGCTAATG...AGTAG|AAA 0 1 13.514
193750976 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 7 3387374 3387426 Syncephalastrum racemosum 13706 CGG|GTACGGCTCT...ATTGACATATTG/GCGAGATTGACA...CCTAG|ATG 2 1 14.908
193750977 GT-AG 0 2.4229892379166257e-05 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 8 3387554 3387608 Syncephalastrum racemosum 13706 CGG|GTAAGCTTCA...AAAACCAAAGCT/CCAAAGCTGAAG...ACTAG|GAC 0 1 17.632
193750978 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 9 3387680 3387730 Syncephalastrum racemosum 13706 ATG|GTAACAGCAG...ACACTCAAAATT/CTATTGGTCACA...TTTAG|GCG 2 1 19.155
193750979 GT-AG 0 1.000000099473604e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 10 3388057 3388116 Syncephalastrum racemosum 13706 CCG|GTAAGATGCA...CACCCCATAATC/ACTCGTTTAACA...ACTAG|ATT 1 1 26.148
193750980 GT-AG 0 1.000000099473604e-05 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 11 3388143 3388197 Syncephalastrum racemosum 13706 GCG|GTAAGTGGAA...TGTATTTTGAAA/AATGCACTCATT...CACAG|ATA 0 1 26.705
193750981 GC-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 12 3388280 3388333 Syncephalastrum racemosum 13706 GGG|GCAAGTACCT...TATGTCTAATAG/TTATGTCTAATA...AACAG|AAC 1 1 28.464
193750982 GT-AG 0 1.000000099473604e-05 47 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 13 3388552 3388598 Syncephalastrum racemosum 13706 GTG|GTAAGCGCTT...ACGATTTTAGAA/TAGAATTTCATC...TGTAG|CTC 0 1 33.14
193750983 GT-AG 0 0.0002794199428833 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 14 3388770 3388820 Syncephalastrum racemosum 13706 CAG|GTATTTGCTT...TTGTTATTGACA/TTGTTATTGACA...TACAG|CTT 0 1 36.808
193750984 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 15 3388884 3388935 Syncephalastrum racemosum 13706 GAG|GTAGATGAGT...CTAACCTTGCTG/GTAAGGCTAACC...ACTAG|TCA 0 1 38.16
193750985 GT-AG 0 2.536082506572843e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 16 3389145 3389193 Syncephalastrum racemosum 13706 AAG|GTATGAATTG...TAATTCATACTT/TAGTAATTCATA...AATAG|TGC 2 1 42.643
193750986 GT-AG 0 0.0003905108633509 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 17 3389289 3389343 Syncephalastrum racemosum 13706 CCG|GTAATCTATG...TCACCTTTGCCC/ATTCAGCTCACC...CAAAG|ATG 1 1 44.68
193750987 GC-AG 0 1.000000099473604e-05 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 18 3389488 3389542 Syncephalastrum racemosum 13706 ACG|GCAAGTAAAA...TTGTACATAATT/TTGTACATAATT...TATAG|GTT 1 1 47.769
193750988 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 19 3389689 3389739 Syncephalastrum racemosum 13706 CCG|GTGAGTGACA...CATGCCTCAATA/AATATATTTATC...TCCAG|CTA 0 1 50.901
193750989 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 20 3389894 3389944 Syncephalastrum racemosum 13706 AAG|GTGAGGAATC...GGTATCTAACTC/ATCTAACTCATA...TGTAG|GGT 1 1 54.204
193750990 GT-AG 0 0.0191637290864005 46 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 21 3389997 3390042 Syncephalastrum racemosum 13706 CGA|GTATGTACAT...TGCTCCTTACCA/TTACATCTAACA...ATTAG|AGA 2 1 55.32
193750991 GT-AG 0 1.704304879033066e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 22 3390154 3390203 Syncephalastrum racemosum 13706 TGA|GTAAGTATAC...TTGTTCTTGGTA/CAGTGCCTCATT...TGCAG|TAG 2 1 57.701
193750992 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 23 3390238 3390288 Syncephalastrum racemosum 13706 GAA|GTAAGACAGA...TAGTCTTTAGTA/AGTGATTTGACA...TGTAG|AAG 0 1 58.43
193750993 GT-AG 0 3.18223107211947e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 24 3390403 3390452 Syncephalastrum racemosum 13706 TTG|GTAAGCTAAA...TAGAGCTTATCT/GCTTATCTAATT...TTCAG|TAT 0 1 60.875
193750994 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 25 3390479 3390534 Syncephalastrum racemosum 13706 ACG|GTAAGAGACT...TCTCGCTGAAAA/ATACAAGTAACA...TATAG|CCG 2 1 61.433
193750995 GT-AG 0 1.000000099473604e-05 59 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 26 3391068 3391126 Syncephalastrum racemosum 13706 ATG|GTAAGAATGG...TTCCTCCTATAC/CCTATACCAACT...ATTAG|GAA 1 1 72.866
193750996 GT-AG 0 0.000354852752001 47 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 27 3391301 3391347 Syncephalastrum racemosum 13706 AAG|GTAAACTAAA...ATTTTCTTGATG/ATTTTCTTGATG...GCTAG|GCG 1 1 76.598
193750997 GT-AG 0 0.0011653730777845 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 28 3391433 3391489 Syncephalastrum racemosum 13706 TAG|GTACACTACT...TGATCCTTGGTT/TTGGTTCTCATT...TGTAG|GGT 2 1 78.421
193750998 GT-AG 0 1.000000099473604e-05 48 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 29 3391600 3391647 Syncephalastrum racemosum 13706 GCA|GTAAGTGAAG...TTATTCTAATCG/ATTATTCTAATC...TGTAG|ATG 1 1 80.781
193750999 GC-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 30 3391774 3391827 Syncephalastrum racemosum 13706 ATG|GCAAGTTTCC...CAATTCTTGAAT/CAATTCTTGAAT...CTTAG|GGC 1 1 83.483
193751000 GT-AG 0 0.0002058650501337 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 31 3392136 3392189 Syncephalastrum racemosum 13706 AAG|GTACTCACAA...TCTGTCTTACAA/GTCTGTCTTACA...TTTAG|CCA 0 1 90.09
193751001 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483381 34480504 32 3392414 3392469 Syncephalastrum racemosum 13706 CAG|GTATAAAGAG...GCAAACTGAACG/AGCAAACTGAAC...AATAG|TAC 2 1 94.895

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 33.39ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)