introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
6 rows where transcript_id = 34480501
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Suggested facets: dinucleotide_pair, score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193750954 | GC-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA528847 34480501 | 1 | 2484725 | 2484782 | Syncephalastrum racemosum 13706 | AAG|GCAAGTCGTA...TCCTCCTGATCC/TTTCATCTCATC...AATAG|GCA | 0 | 1 | 11.677 |
193750955 | GT-AG | 0 | 1.000000099473604e-05 | 93 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA528847 34480501 | 2 | 2484990 | 2485082 | Syncephalastrum racemosum 13706 | AAG|GTAAGAAATA...CTCTTCCTAATG/TGGTTGTTCATG...CGTAG|ACA | 0 | 1 | 15.963 |
193750956 | GT-AG | 0 | 1.000000099473604e-05 | 98 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA528847 34480501 | 3 | 2485273 | 2485370 | Syncephalastrum racemosum 13706 | AAG|GTAAAGCACG...AGTCCTCTGACT/TGACTTCTCACT...TTTAG|ACC | 1 | 1 | 19.896 |
193750957 | GT-AG | 0 | 0.000218098920447 | 80 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA528847 34480501 | 4 | 2485562 | 2485641 | Syncephalastrum racemosum 13706 | TGG|GTAAGCTTCA...AACTCATTACCT/CTCAAACTCATT...TTTAG|GCC | 0 | 1 | 23.851 |
193750958 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA528847 34480501 | 5 | 2487154 | 2487214 | Syncephalastrum racemosum 13706 | AAG|GTAGGAAGAT...GAAGACTTACCG/AGAAGACTTACC...GTTAG|ATC | 0 | 1 | 55.155 |
193750959 | GT-AG | 0 | 1.000000099473604e-05 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA528847 34480501 | 6 | 2488388 | 2488439 | Syncephalastrum racemosum 13706 | CAG|GTAAGCGATA...AAAAGCTCAATT/CAAAAGCTCAAT...CTTAG|GTT | 0 | 1 | 79.441 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);