introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 34480499
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Suggested facets: dinucleotide_pair, score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193750941 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482328 34480499 | 1 | 1959333 | 1959390 | Syncephalastrum racemosum 13706 | CAG|GTAGAGAAAG...GGGCTCTCATCC/TGGGCTCTCATC...AATAG|CTC | 0 | 1 | 0.836 |
193750942 | GT-AG | 0 | 1.000000099473604e-05 | 71 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482328 34480499 | 2 | 1959599 | 1959669 | Syncephalastrum racemosum 13706 | GAG|GTGAGTCTAT...CATCCATTGACT/CATTGACTCACT...GGTAG|CGC | 1 | 1 | 4.975 |
193750943 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482328 34480499 | 3 | 1960587 | 1960639 | Syncephalastrum racemosum 13706 | CGC|GTAAGTACTA...CCAAACTTACTC/AACTTACTCACT...TAAAG|GGC | 0 | 1 | 23.224 |
193750944 | GT-AG | 0 | 0.0005416061118152 | 57 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482328 34480499 | 4 | 1961348 | 1961404 | Syncephalastrum racemosum 13706 | CGT|GTAAGTCTCC...CGCTCCTTGACC/CGCTCCTTGACC...TATAG|GCA | 0 | 1 | 37.313 |
193750945 | GT-AG | 0 | 0.0004234436826187 | 48 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482328 34480499 | 5 | 1961658 | 1961705 | Syncephalastrum racemosum 13706 | AGG|GTATGCAGCT...AATATCATATAT/AATTGGCTCACA...GCTAG|GCC | 1 | 1 | 42.348 |
193750946 | GC-AG | 0 | 1.000000099473604e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482328 34480499 | 6 | 1961870 | 1961919 | Syncephalastrum racemosum 13706 | AAG|GCAAGTCAGC...GCGCTCTTGACT/TCTTGACTGACT...TGTAG|GAA | 0 | 1 | 45.612 |
193750947 | GT-AG | 0 | 0.0002603927501932 | 62 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482328 34480499 | 7 | 1962322 | 1962383 | Syncephalastrum racemosum 13706 | GAG|GTATGCATAT...ATGGTCTACATG/AAGGTGCTGACG...TCTAG|TTT | 0 | 1 | 53.612 |
193750948 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482328 34480499 | 8 | 1962609 | 1962659 | Syncephalastrum racemosum 13706 | AAT|GTAAGTCACC...CGTGGCTCATCC/ACGTGGCTCATC...AATAG|ATC | 0 | 1 | 58.09 |
193750949 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482328 34480499 | 9 | 1962843 | 1962893 | Syncephalastrum racemosum 13706 | AAG|GTGAGCGTAA...CGGATTTTGATC/CGGATTTTGATC...TCTAG|TCT | 0 | 1 | 61.731 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);