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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

16 rows where transcript_id = 34480497

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193750921 GT-AG 0 2.3457236637693848e-05 73 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 1 98098 98170 Syncephalastrum racemosum 13706 CAG|GTGTATATCG...TTCCCCTTCATT/CCTTCATTCATA...ACAAG|GCC 1 1 4.495
193750922 GT-AG 0 1.000000099473604e-05 83 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 2 98320 98402 Syncephalastrum racemosum 13706 CTC|GTGAGTACAA...TTTTTTTTAAAA/TTTTTTTTTAAA...AAAAG|TCG 0 1 7.42
193750923 GT-AG 0 1.000000099473604e-05 58 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 3 98678 98735 Syncephalastrum racemosum 13706 AGG|GTAAGAAATA...TACCTCTTGATT/TACCTCTTGATT...CTTAG|ATG 2 1 12.819
193750924 GT-AG 0 1.000000099473604e-05 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 4 98814 98868 Syncephalastrum racemosum 13706 AAA|GTAAGCGCGT...TGTTTCATGATG/CATATATTCATG...TATAG|ACG 2 1 14.35
193750925 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 5 98936 98986 Syncephalastrum racemosum 13706 ACG|GTACAGCGGA...GTTGCTGAGACT/CTGAGACTAACA...AATAG|GTC 0 1 15.665
193750926 GT-AG 0 0.000233511555619 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 6 99326 99376 Syncephalastrum racemosum 13706 GCG|GTATGTACGA...CTTGGCTAAACA/GCTTGGCTAAAC...CATAG|CTT 0 1 22.32
193750927 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 7 99963 100014 Syncephalastrum racemosum 13706 GAG|GTACGTTATA...CGGTGTGTAATG/AATGAATTCATG...ATTAG|GCG 1 1 33.824
193750928 GT-AG 0 0.0034824463391645 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 8 100332 100385 Syncephalastrum racemosum 13706 TCG|GTATGTAGGG...TATGTCTTAATT/TATGTCTTAATT...TGTAG|CGT 0 1 40.047
193750929 GT-AG 0 1.000000099473604e-05 65 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 9 100712 100776 Syncephalastrum racemosum 13706 AAG|GTACAGACCG...CTTTTCTTTTCC/TTCCTATTTATT...ATTAG|GAA 2 1 46.447
193750930 GT-AG 0 0.041914326298402 65 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 10 102120 102184 Syncephalastrum racemosum 13706 TCA|GTATGTCTAG...TTTTCTGTAATG/TTTTCTGTAATG...TCTAG|ATA 1 1 72.811
193750931 GT-AG 0 1.000000099473604e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 11 102403 102462 Syncephalastrum racemosum 13706 GAG|GTAAGACGAT...TTTCCCGTGACT/AACCTATTGATT...TGCAG|ATT 0 1 77.091
193750932 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 12 102550 102605 Syncephalastrum racemosum 13706 AAG|GTAACAGAAG...GAAGCTATAACG/CTATAACGCATT...TATAG|AAC 0 1 78.799
193750933 GT-AG 0 1.1902946224373864e-05 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 13 102675 102729 Syncephalastrum racemosum 13706 AGC|GTAAGTAGCT...CTTCCTTGGACT/CCGTCATTTACC...CGTAG|CTT 0 1 80.153
193750934 GT-AG 0 1.000000099473604e-05 58 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 14 102814 102871 Syncephalastrum racemosum 13706 AAG|GTAAGCTGCC...CATGTTTTGCTC/GTTTTGCTCATC...AATAG|CTC 0 1 81.802
193750935 GT-AG 0 1.000000099473604e-05 66 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 15 103005 103070 Syncephalastrum racemosum 13706 GAG|GTAAGATCTA...GATTCCATCACA/CATATACTAACA...TGCAG|TGA 1 1 84.413
193750936 GT-AG 0 1.000000099473604e-05 65 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 16 103370 103434 Syncephalastrum racemosum 13706 GAG|GTAAAACTTG...CATCTTTTACTT/TCATCTTTTACT...TATAG|CGC 0 1 90.283

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 23.875ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)