introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
16 rows where transcript_id = 34480497
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193750921 | GT-AG | 0 | 2.3457236637693848e-05 | 73 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 | 1 | 98098 | 98170 | Syncephalastrum racemosum 13706 | CAG|GTGTATATCG...TTCCCCTTCATT/CCTTCATTCATA...ACAAG|GCC | 1 | 1 | 4.495 |
193750922 | GT-AG | 0 | 1.000000099473604e-05 | 83 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 | 2 | 98320 | 98402 | Syncephalastrum racemosum 13706 | CTC|GTGAGTACAA...TTTTTTTTAAAA/TTTTTTTTTAAA...AAAAG|TCG | 0 | 1 | 7.42 |
193750923 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 | 3 | 98678 | 98735 | Syncephalastrum racemosum 13706 | AGG|GTAAGAAATA...TACCTCTTGATT/TACCTCTTGATT...CTTAG|ATG | 2 | 1 | 12.819 |
193750924 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 | 4 | 98814 | 98868 | Syncephalastrum racemosum 13706 | AAA|GTAAGCGCGT...TGTTTCATGATG/CATATATTCATG...TATAG|ACG | 2 | 1 | 14.35 |
193750925 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 | 5 | 98936 | 98986 | Syncephalastrum racemosum 13706 | ACG|GTACAGCGGA...GTTGCTGAGACT/CTGAGACTAACA...AATAG|GTC | 0 | 1 | 15.665 |
193750926 | GT-AG | 0 | 0.000233511555619 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 | 6 | 99326 | 99376 | Syncephalastrum racemosum 13706 | GCG|GTATGTACGA...CTTGGCTAAACA/GCTTGGCTAAAC...CATAG|CTT | 0 | 1 | 22.32 |
193750927 | GT-AG | 0 | 1.000000099473604e-05 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 | 7 | 99963 | 100014 | Syncephalastrum racemosum 13706 | GAG|GTACGTTATA...CGGTGTGTAATG/AATGAATTCATG...ATTAG|GCG | 1 | 1 | 33.824 |
193750928 | GT-AG | 0 | 0.0034824463391645 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 | 8 | 100332 | 100385 | Syncephalastrum racemosum 13706 | TCG|GTATGTAGGG...TATGTCTTAATT/TATGTCTTAATT...TGTAG|CGT | 0 | 1 | 40.047 |
193750929 | GT-AG | 0 | 1.000000099473604e-05 | 65 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 | 9 | 100712 | 100776 | Syncephalastrum racemosum 13706 | AAG|GTACAGACCG...CTTTTCTTTTCC/TTCCTATTTATT...ATTAG|GAA | 2 | 1 | 46.447 |
193750930 | GT-AG | 0 | 0.041914326298402 | 65 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 | 10 | 102120 | 102184 | Syncephalastrum racemosum 13706 | TCA|GTATGTCTAG...TTTTCTGTAATG/TTTTCTGTAATG...TCTAG|ATA | 1 | 1 | 72.811 |
193750931 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 | 11 | 102403 | 102462 | Syncephalastrum racemosum 13706 | GAG|GTAAGACGAT...TTTCCCGTGACT/AACCTATTGATT...TGCAG|ATT | 0 | 1 | 77.091 |
193750932 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 | 12 | 102550 | 102605 | Syncephalastrum racemosum 13706 | AAG|GTAACAGAAG...GAAGCTATAACG/CTATAACGCATT...TATAG|AAC | 0 | 1 | 78.799 |
193750933 | GT-AG | 0 | 1.1902946224373864e-05 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 | 13 | 102675 | 102729 | Syncephalastrum racemosum 13706 | AGC|GTAAGTAGCT...CTTCCTTGGACT/CCGTCATTTACC...CGTAG|CTT | 0 | 1 | 80.153 |
193750934 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 | 14 | 102814 | 102871 | Syncephalastrum racemosum 13706 | AAG|GTAAGCTGCC...CATGTTTTGCTC/GTTTTGCTCATC...AATAG|CTC | 0 | 1 | 81.802 |
193750935 | GT-AG | 0 | 1.000000099473604e-05 | 66 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 | 15 | 103005 | 103070 | Syncephalastrum racemosum 13706 | GAG|GTAAGATCTA...GATTCCATCACA/CATATACTAACA...TGCAG|TGA | 1 | 1 | 84.413 |
193750936 | GT-AG | 0 | 1.000000099473604e-05 | 65 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481105 34480497 | 16 | 103370 | 103434 | Syncephalastrum racemosum 13706 | GAG|GTAAAACTTG...CATCTTTTACTT/TCATCTTTTACT...TATAG|CGC | 0 | 1 | 90.283 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);