introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
11 rows where transcript_id = 34480494
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193750903 | GT-AG | 0 | 0.0002411108148367 | 59 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 | 1 | 4322135 | 4322193 | Syncephalastrum racemosum 13706 | AAA|GTAAGTTTTG...GAATCCATGATC/TCCTGACTGACT...TCTAG|AAT | 0 | 1 | 1.966 |
193750904 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 | 2 | 4321969 | 4322027 | Syncephalastrum racemosum 13706 | CTT|GTAAGAAAAA...AAATTTGTAATG/AAATTTGTAATG...AACAG|TTG | 2 | 1 | 3.97 |
193750905 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 | 3 | 4321769 | 4321819 | Syncephalastrum racemosum 13706 | AGC|GTGAGTTTAT...TAGTTTCTGATG/TAGTTTCTGATG...CTCAG|GCC | 1 | 1 | 6.76 |
193750906 | GT-AG | 0 | 1.000000099473604e-05 | 80 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 | 4 | 4321633 | 4321712 | Syncephalastrum racemosum 13706 | CGG|GTAAGAAAGG...TTTTTCTTTTTG/CATGGACTCAGT...TATAG|AGG | 0 | 1 | 7.809 |
193750907 | GT-AG | 0 | 0.5848469489599921 | 64 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 | 5 | 4321290 | 4321353 | Syncephalastrum racemosum 13706 | TAT|GTATGTTCTG...AATGCCTTAATG/AAATTATTAACC...TGTAG|CTC | 0 | 1 | 13.034 |
193750908 | GT-AG | 0 | 1.000000099473604e-05 | 69 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 | 6 | 4321137 | 4321205 | Syncephalastrum racemosum 13706 | CGG|GTAAGATAAT...ATTTCCTTTTTT/TCTTGTATCATT...GATAG|TTT | 0 | 1 | 14.607 |
193750909 | GT-AG | 0 | 2.024666445864907e-05 | 167 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 | 7 | 4320553 | 4320719 | Syncephalastrum racemosum 13706 | GGG|GTAAGCCGCC...TATATTTTATTC/CATATACTTATT...TGTAG|ACC | 0 | 1 | 22.416 |
193750910 | GT-AG | 0 | 1.000000099473604e-05 | 156 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 | 8 | 4320263 | 4320418 | Syncephalastrum racemosum 13706 | GGG|GTAAGTGTGT...TGTTTCTAAATG/TTGTTTCTAAAT...CTTAG|CTC | 2 | 1 | 24.925 |
193750911 | GT-AG | 0 | 1.0235876861344512e-05 | 939 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 | 9 | 4319141 | 4320079 | Syncephalastrum racemosum 13706 | AAA|GTAATTTAAT...TTTTTCTGGAGT/ATGATACTAAAG...TGCAG|CGA | 2 | 1 | 28.352 |
193750912 | GT-AG | 0 | 1.000000099473604e-05 | 92 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 | 10 | 4317979 | 4318070 | Syncephalastrum racemosum 13706 | TGG|GTAAGGTTTG...CCACTTTTATTC/GATTTGTTTACC...ATTAG|ACT | 1 | 1 | 48.39 |
193750913 | GT-AG | 0 | 1.000000099473604e-05 | 87 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 | 11 | 4317756 | 4317842 | Syncephalastrum racemosum 13706 | CCG|GTAAGAAGAG...TTTATTTTATTT/ATTTATTTTATT...TATAG|GAC | 2 | 1 | 50.936 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);