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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

11 rows where transcript_id = 34480494

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193750903 GT-AG 0 0.0002411108148367 59 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 1 4322135 4322193 Syncephalastrum racemosum 13706 AAA|GTAAGTTTTG...GAATCCATGATC/TCCTGACTGACT...TCTAG|AAT 0 1 1.966
193750904 GT-AG 0 1.000000099473604e-05 59 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 2 4321969 4322027 Syncephalastrum racemosum 13706 CTT|GTAAGAAAAA...AAATTTGTAATG/AAATTTGTAATG...AACAG|TTG 2 1 3.97
193750905 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 3 4321769 4321819 Syncephalastrum racemosum 13706 AGC|GTGAGTTTAT...TAGTTTCTGATG/TAGTTTCTGATG...CTCAG|GCC 1 1 6.76
193750906 GT-AG 0 1.000000099473604e-05 80 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 4 4321633 4321712 Syncephalastrum racemosum 13706 CGG|GTAAGAAAGG...TTTTTCTTTTTG/CATGGACTCAGT...TATAG|AGG 0 1 7.809
193750907 GT-AG 0 0.5848469489599921 64 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 5 4321290 4321353 Syncephalastrum racemosum 13706 TAT|GTATGTTCTG...AATGCCTTAATG/AAATTATTAACC...TGTAG|CTC 0 1 13.034
193750908 GT-AG 0 1.000000099473604e-05 69 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 6 4321137 4321205 Syncephalastrum racemosum 13706 CGG|GTAAGATAAT...ATTTCCTTTTTT/TCTTGTATCATT...GATAG|TTT 0 1 14.607
193750909 GT-AG 0 2.024666445864907e-05 167 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 7 4320553 4320719 Syncephalastrum racemosum 13706 GGG|GTAAGCCGCC...TATATTTTATTC/CATATACTTATT...TGTAG|ACC 0 1 22.416
193750910 GT-AG 0 1.000000099473604e-05 156 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 8 4320263 4320418 Syncephalastrum racemosum 13706 GGG|GTAAGTGTGT...TGTTTCTAAATG/TTGTTTCTAAAT...CTTAG|CTC 2 1 24.925
193750911 GT-AG 0 1.0235876861344512e-05 939 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 9 4319141 4320079 Syncephalastrum racemosum 13706 AAA|GTAATTTAAT...TTTTTCTGGAGT/ATGATACTAAAG...TGCAG|CGA 2 1 28.352
193750912 GT-AG 0 1.000000099473604e-05 92 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 10 4317979 4318070 Syncephalastrum racemosum 13706 TGG|GTAAGGTTTG...CCACTTTTATTC/GATTTGTTTACC...ATTAG|ACT 1 1 48.39
193750913 GT-AG 0 1.000000099473604e-05 87 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510841 34480494 11 4317756 4317842 Syncephalastrum racemosum 13706 CCG|GTAAGAAGAG...TTTATTTTATTT/ATTTATTTTATT...TATAG|GAC 2 1 50.936

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 25.814ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)