introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
10 rows where transcript_id = 34480492
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193750891 | GT-AG | 0 | 3.192655149260355e-05 | 92 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA450211 34480492 | 1 | 2395795 | 2395886 | Syncephalastrum racemosum 13706 | AAA|GTAAGTTAAG...TATTCATTAATA/TTAATATTCATT...CCCAG|CTT | 2 | 1 | 3.761 |
193750892 | GT-AG | 0 | 1.000000099473604e-05 | 70 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA450211 34480492 | 2 | 2395647 | 2395716 | Syncephalastrum racemosum 13706 | AAG|GTGACATATA...CGTCTCTTATCT/ATATGACTCATC...TCCAG|AAA | 2 | 1 | 5.145 |
193750893 | GT-AG | 0 | 8.405336315326061e-05 | 97 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA450211 34480492 | 3 | 2395097 | 2395193 | Syncephalastrum racemosum 13706 | TCG|GTAAGTTCCA...TTTTTGTTAATG/TTTTTGTTAATG...TCAAG|CGA | 2 | 1 | 13.181 |
193750894 | GT-AG | 0 | 4.78457535139827e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA450211 34480492 | 4 | 2394233 | 2394282 | Syncephalastrum racemosum 13706 | TCG|GTAAGCTCAG...CCAACTTTACTC/ACTTTACTCATG...TACAG|GCT | 0 | 1 | 27.621 |
193750895 | GT-AG | 0 | 1.000000099473604e-05 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA450211 34480492 | 5 | 2393565 | 2393616 | Syncephalastrum racemosum 13706 | AAG|GTAATTATTC...AACACTGTAGCA/GTAGCACTCACC...TTCAG|GTG | 1 | 1 | 38.549 |
193750896 | GT-AG | 0 | 1.000000099473604e-05 | 48 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA450211 34480492 | 6 | 2391952 | 2391999 | Syncephalastrum racemosum 13706 | GAG|GTAGATTATC...GGATTGTTACTG/TTGTTACTGACC...CAAAG|GCA | 0 | 1 | 66.312 |
193750897 | GT-AG | 0 | 1.000000099473604e-05 | 68 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA450211 34480492 | 7 | 2390744 | 2390811 | Syncephalastrum racemosum 13706 | ATG|GTAAATGACA...TGATCTTTATAT/CTCGTACTGATC...TATAG|CAA | 0 | 1 | 86.535 |
193750898 | GT-AG | 0 | 4.2238134211717306e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA450211 34480492 | 8 | 2390607 | 2390656 | Syncephalastrum racemosum 13706 | ATG|GTATGTCAAC...GCTATCTAACTT/CGCTATCTAACT...AGTAG|TCT | 0 | 1 | 88.079 |
193750899 | GT-AG | 0 | 1.000000099473604e-05 | 47 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA450211 34480492 | 9 | 2390449 | 2390495 | Syncephalastrum racemosum 13706 | AAG|GTAAGCAGGA...TGAATTCTAACA/TGAATTCTAACA...TGCAG|AAA | 0 | 1 | 90.048 |
193750900 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA450211 34480492 | 10 | 2390177 | 2390234 | Syncephalastrum racemosum 13706 | AAC|GTAAGTGGAG...CATGCATTGACG/CATGCATTGACG...GATAG|ATT | 1 | 1 | 93.844 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);