introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
22 rows where transcript_id = 34480491
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193750869 | GT-AG | 0 | 1.000000099473604e-05 | 73 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 1 | 4687645 | 4687717 | Syncephalastrum racemosum 13706 | TCG|GTAATGCATC...TAGACCTTATGG/ATGGTATTCATA...TCTAG|GTG | 1 | 1 | 7.093 |
193750870 | GT-AG | 0 | 0.0020055492352926 | 67 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 2 | 4687823 | 4687889 | Syncephalastrum racemosum 13706 | AGC|GTACGTGATA...TTCCCTTTAATT/TTCCCTTTAATT...AATAG|AGA | 1 | 1 | 8.801 |
193750871 | GT-AG | 0 | 0.0001150815900779 | 75 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 3 | 4688022 | 4688096 | Syncephalastrum racemosum 13706 | TTG|GTAAACCAAA...CTCTTTTTGATT/CTCTTTTTGATT...CCTAG|CCA | 1 | 1 | 10.948 |
193750872 | GT-AG | 0 | 1.000000099473604e-05 | 71 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 4 | 4688472 | 4688542 | Syncephalastrum racemosum 13706 | AAG|GTAACGGAAA...GACTTTTTGTCT/TGGCTATTAAAA...TACAG|GCG | 1 | 1 | 17.049 |
193750873 | GT-AG | 0 | 1.0408019286113404e-05 | 80 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 5 | 4688870 | 4688949 | Syncephalastrum racemosum 13706 | AGA|GTAAGTACAC...AGTTCATTGACT/AGTTCATTGACT...CGTAG|CCT | 1 | 1 | 22.369 |
193750874 | GT-AG | 0 | 1.000000099473604e-05 | 64 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 6 | 4689647 | 4689710 | Syncephalastrum racemosum 13706 | CTG|GTAAGTGTAT...TGCATCTTATCC/CTTATCCTGAAT...CTAAG|GGA | 2 | 1 | 33.707 |
193750875 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 7 | 4689829 | 4689888 | Syncephalastrum racemosum 13706 | GAA|GTATGAGGAA...GAAAGCTAATCT/GGAAAGCTAATC...CATAG|ACC | 0 | 1 | 35.627 |
193750876 | GT-AG | 0 | 0.0005485871680347 | 86 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 8 | 4690003 | 4690088 | Syncephalastrum racemosum 13706 | GTG|GTATGTACAT...AAGGTCTTACTA/TCTTTGCTCATG...TTTAG|AAA | 0 | 1 | 37.482 |
193750877 | GT-AG | 0 | 1.000000099473604e-05 | 77 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 9 | 4690884 | 4690960 | Syncephalastrum racemosum 13706 | AAG|GTAAGCGTTC...TTTTTTTTCCTG/AGCTCACTCACT...TCAAG|TCC | 0 | 1 | 50.415 |
193750878 | GT-AG | 0 | 0.0015758790243136 | 72 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 10 | 4691329 | 4691400 | Syncephalastrum racemosum 13706 | CAC|GTATGTCTGA...ATTGTTTTGTTC/AAGCAGCTCATT...TTCAG|GGC | 2 | 1 | 56.401 |
193750879 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 11 | 4691519 | 4691574 | Syncephalastrum racemosum 13706 | ACG|GTAAAATATA...TTGTCCTCATCA/TTTGTCCTCATC...ACTAG|GGT | 0 | 1 | 58.321 |
193750880 | GT-AG | 0 | 1.000000099473604e-05 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 12 | 4691701 | 4691752 | Syncephalastrum racemosum 13706 | CAA|GTGAGTCCAG...TGGTCCATGAAA/GCATCACTCATA...TGTAG|CTT | 0 | 1 | 60.371 |
193750881 | GT-AG | 0 | 1.000000099473604e-05 | 69 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 13 | 4692076 | 4692144 | Syncephalastrum racemosum 13706 | AAA|GTAAGTGACG...GTGAACTCACCG/AGTGAACTCACC...ATTAG|TCC | 2 | 1 | 65.626 |
193750882 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 14 | 4692287 | 4692335 | Syncephalastrum racemosum 13706 | GGC|GTAAGTAACC...CGAACCTCATTT/TCGAACCTCATT...TATAG|ATT | 0 | 1 | 67.936 |
193750883 | GT-AG | 0 | 1.000000099473604e-05 | 79 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 15 | 4692424 | 4692502 | Syncephalastrum racemosum 13706 | GAG|GTAAATGAGA...GTTCTCTTACGC/GGTTCTCTTACG...ATTAG|GTT | 1 | 1 | 69.367 |
193750884 | GT-AG | 0 | 1.000000099473604e-05 | 67 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 16 | 4693203 | 4693269 | Syncephalastrum racemosum 13706 | AAG|GTGAGAGCTT...GATCTCATGACC/AATGATCTCATG...CCCAG|GCC | 2 | 1 | 80.755 |
193750885 | GT-AG | 0 | 1.000000099473604e-05 | 75 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 17 | 4693315 | 4693389 | Syncephalastrum racemosum 13706 | AAG|GTACAAACGA...TGCGTCTTTGTT/ACCTAATTCATG...TGCAG|GAT | 2 | 1 | 81.487 |
193750886 | GT-AG | 0 | 2.2198084657461224e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 18 | 4693555 | 4693604 | Syncephalastrum racemosum 13706 | CGT|GTAAGTCCAC...TAGATCTTGACA/ACCGTACTTATA...CGTAG|GGG | 2 | 1 | 84.171 |
193750887 | GT-AG | 0 | 1.000000099473604e-05 | 78 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 19 | 4693893 | 4693970 | Syncephalastrum racemosum 13706 | CAA|GTTAGGGTAA...ATGTTTTTGTTA/GTTTTTGTTACA...TTGAG|ACG | 2 | 1 | 88.856 |
193750888 | GT-AG | 0 | 1.000000099473604e-05 | 72 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 20 | 4694254 | 4694325 | Syncephalastrum racemosum 13706 | AAA|GTAAAGAAAA...GTCTCTTTGTCA/ATCATACTCACT...AATAG|AAA | 0 | 1 | 93.46 |
193750889 | GT-AG | 0 | 4.297566084712244e-05 | 84 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 21 | 4694485 | 4694568 | Syncephalastrum racemosum 13706 | AAG|GTACACACAC...CTCTTCTCACTT/ACTCTTCTCACT...TTCAG|GTT | 0 | 1 | 96.047 |
193750890 | GT-AG | 0 | 1.000000099473604e-05 | 86 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 | 22 | 4694763 | 4694848 | Syncephalastrum racemosum 13706 | CTG|GTTTGTGTTT...TTTTTTTTTTTT/GGTGTTGTAACC...TGCAG|GAG | 2 | 1 | 99.203 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);