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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

22 rows where transcript_id = 34480491

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193750869 GT-AG 0 1.000000099473604e-05 73 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 1 4687645 4687717 Syncephalastrum racemosum 13706 TCG|GTAATGCATC...TAGACCTTATGG/ATGGTATTCATA...TCTAG|GTG 1 1 7.093
193750870 GT-AG 0 0.0020055492352926 67 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 2 4687823 4687889 Syncephalastrum racemosum 13706 AGC|GTACGTGATA...TTCCCTTTAATT/TTCCCTTTAATT...AATAG|AGA 1 1 8.801
193750871 GT-AG 0 0.0001150815900779 75 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 3 4688022 4688096 Syncephalastrum racemosum 13706 TTG|GTAAACCAAA...CTCTTTTTGATT/CTCTTTTTGATT...CCTAG|CCA 1 1 10.948
193750872 GT-AG 0 1.000000099473604e-05 71 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 4 4688472 4688542 Syncephalastrum racemosum 13706 AAG|GTAACGGAAA...GACTTTTTGTCT/TGGCTATTAAAA...TACAG|GCG 1 1 17.049
193750873 GT-AG 0 1.0408019286113404e-05 80 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 5 4688870 4688949 Syncephalastrum racemosum 13706 AGA|GTAAGTACAC...AGTTCATTGACT/AGTTCATTGACT...CGTAG|CCT 1 1 22.369
193750874 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 6 4689647 4689710 Syncephalastrum racemosum 13706 CTG|GTAAGTGTAT...TGCATCTTATCC/CTTATCCTGAAT...CTAAG|GGA 2 1 33.707
193750875 GT-AG 0 1.000000099473604e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 7 4689829 4689888 Syncephalastrum racemosum 13706 GAA|GTATGAGGAA...GAAAGCTAATCT/GGAAAGCTAATC...CATAG|ACC 0 1 35.627
193750876 GT-AG 0 0.0005485871680347 86 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 8 4690003 4690088 Syncephalastrum racemosum 13706 GTG|GTATGTACAT...AAGGTCTTACTA/TCTTTGCTCATG...TTTAG|AAA 0 1 37.482
193750877 GT-AG 0 1.000000099473604e-05 77 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 9 4690884 4690960 Syncephalastrum racemosum 13706 AAG|GTAAGCGTTC...TTTTTTTTCCTG/AGCTCACTCACT...TCAAG|TCC 0 1 50.415
193750878 GT-AG 0 0.0015758790243136 72 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 10 4691329 4691400 Syncephalastrum racemosum 13706 CAC|GTATGTCTGA...ATTGTTTTGTTC/AAGCAGCTCATT...TTCAG|GGC 2 1 56.401
193750879 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 11 4691519 4691574 Syncephalastrum racemosum 13706 ACG|GTAAAATATA...TTGTCCTCATCA/TTTGTCCTCATC...ACTAG|GGT 0 1 58.321
193750880 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 12 4691701 4691752 Syncephalastrum racemosum 13706 CAA|GTGAGTCCAG...TGGTCCATGAAA/GCATCACTCATA...TGTAG|CTT 0 1 60.371
193750881 GT-AG 0 1.000000099473604e-05 69 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 13 4692076 4692144 Syncephalastrum racemosum 13706 AAA|GTAAGTGACG...GTGAACTCACCG/AGTGAACTCACC...ATTAG|TCC 2 1 65.626
193750882 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 14 4692287 4692335 Syncephalastrum racemosum 13706 GGC|GTAAGTAACC...CGAACCTCATTT/TCGAACCTCATT...TATAG|ATT 0 1 67.936
193750883 GT-AG 0 1.000000099473604e-05 79 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 15 4692424 4692502 Syncephalastrum racemosum 13706 GAG|GTAAATGAGA...GTTCTCTTACGC/GGTTCTCTTACG...ATTAG|GTT 1 1 69.367
193750884 GT-AG 0 1.000000099473604e-05 67 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 16 4693203 4693269 Syncephalastrum racemosum 13706 AAG|GTGAGAGCTT...GATCTCATGACC/AATGATCTCATG...CCCAG|GCC 2 1 80.755
193750885 GT-AG 0 1.000000099473604e-05 75 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 17 4693315 4693389 Syncephalastrum racemosum 13706 AAG|GTACAAACGA...TGCGTCTTTGTT/ACCTAATTCATG...TGCAG|GAT 2 1 81.487
193750886 GT-AG 0 2.2198084657461224e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 18 4693555 4693604 Syncephalastrum racemosum 13706 CGT|GTAAGTCCAC...TAGATCTTGACA/ACCGTACTTATA...CGTAG|GGG 2 1 84.171
193750887 GT-AG 0 1.000000099473604e-05 78 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 19 4693893 4693970 Syncephalastrum racemosum 13706 CAA|GTTAGGGTAA...ATGTTTTTGTTA/GTTTTTGTTACA...TTGAG|ACG 2 1 88.856
193750888 GT-AG 0 1.000000099473604e-05 72 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 20 4694254 4694325 Syncephalastrum racemosum 13706 AAA|GTAAAGAAAA...GTCTCTTTGTCA/ATCATACTCACT...AATAG|AAA 0 1 93.46
193750889 GT-AG 0 4.297566084712244e-05 84 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 21 4694485 4694568 Syncephalastrum racemosum 13706 AAG|GTACACACAC...CTCTTCTCACTT/ACTCTTCTCACT...TTCAG|GTT 0 1 96.047
193750890 GT-AG 0 1.000000099473604e-05 86 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA69163 34480491 22 4694763 4694848 Syncephalastrum racemosum 13706 CTG|GTTTGTGTTT...TTTTTTTTTTTT/GGTGTTGTAACC...TGCAG|GAG 2 1 99.203

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 29.861ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)