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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

17 rows where transcript_id = 34480489

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193750848 GT-AG 0 1.000000099473604e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449895 34480489 1 1872698 1872757 Syncephalastrum racemosum 13706 AAG|GTAAGAAATA...ACAACTTTAAAA/ACAACTTTAAAA...GACAG|CTA 0 1 0.889
193750849 GT-AG 0 0.0003505070909939 75 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449895 34480489 2 1872946 1873020 Syncephalastrum racemosum 13706 CCC|GTAAATATTC...TTCTCATTGACG/CCTGTTCTCATT...TCTAG|CAC 2 1 3.82
193750850 GT-AG 0 0.0114042651908935 82 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449895 34480489 3 1873148 1873229 Syncephalastrum racemosum 13706 ATC|GTACGTTCCT...TTTTCCATGACA/GGATCTCTGATT...CACAG|GAA 0 1 5.8
193750851 GT-AG 0 1.000000099473604e-05 71 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449895 34480489 4 1873401 1873471 Syncephalastrum racemosum 13706 GAG|GTCAGAGTCA...CAAACCCTACCA/AATCAGCTCAAC...TGCAG|GCG 0 1 8.466
193750852 GT-AG 0 0.0001514198087968 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449895 34480489 5 1873671 1873727 Syncephalastrum racemosum 13706 TGG|GTAAGCTGCA...GCTTTCTAAATG/CGCTTTCTAAAT...CCTAG|ATA 1 1 11.568
193750853 GT-AG 0 0.0002870864926323 47 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449895 34480489 6 1873853 1873899 Syncephalastrum racemosum 13706 AGT|GTAACAAATG...ATTATATTAAAC/ATTATATTAAAC...ACTAG|GCG 0 1 13.517
193750854 GT-AG 0 1.4316886672009218e-05 48 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449895 34480489 7 1874014 1874061 Syncephalastrum racemosum 13706 AAA|GTACAGTCGT...CTATCACTGACC/CTATCACTGACC...TACAG|CGT 0 1 15.295
193750855 GT-AG 0 1.7568471455486713e-05 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449895 34480489 8 1874164 1874220 Syncephalastrum racemosum 13706 GTA|GTAAGTCATC...CCTTCTTGAATT/ACACAACTCACA...GCCAG|GTC 0 1 16.885
193750856 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449895 34480489 9 1874689 1874741 Syncephalastrum racemosum 13706 AAG|GTGAATATGA...TATGCCTTTGCC/CTTTGCCTAATA...TCCAG|GGA 0 1 24.181
193750857 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449895 34480489 10 1875292 1875344 Syncephalastrum racemosum 13706 AAG|GTATGGAGAA...AATTCCACAAAA/AGTGGACTGACG...TTCAG|TCT 1 1 32.756
193750858 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449895 34480489 11 1875657 1875705 Syncephalastrum racemosum 13706 CGG|GTAAGCTAAA...CAAAGATTAGAG/TATACACTCATG...AACAG|AGG 1 1 37.621
193750859 GT-AG 0 0.0001561967733603 45 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449895 34480489 12 1875813 1875857 Syncephalastrum racemosum 13706 ACG|GTAGGCTTCT...TCAGACTAAATT/GTCAGACTAAAT...TATAG|GTT 0 1 39.289
193750860 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449895 34480489 13 1876081 1876132 Syncephalastrum racemosum 13706 TTG|GTGAGTTTCT...TTATTTTTAGCT/TAGCTGTTCACT...TCTAG|GTG 1 1 42.766
193750861 GT-AG 0 1.000000099473604e-05 61 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449895 34480489 14 1877326 1877386 Syncephalastrum racemosum 13706 AAG|GTATGAAAAA...TGTGTCTTACAT/TTGTGTCTTACA...GATAG|ATT 0 1 61.366
193750862 GT-AG 0 2.124818296490881e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449895 34480489 15 1878520 1878572 Syncephalastrum racemosum 13706 TAG|GTAAGCACAT...TCAACCTTGACG/GCGTGTCTCAAC...CTTAG|TGC 2 1 79.03
193750863 GT-AG 0 1.000000099473604e-05 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449895 34480489 16 1879390 1879446 Syncephalastrum racemosum 13706 CAG|GTGAGATAGA...GCTAACATATAT/ACTCGGCTAACA...CGCAG|GGT 0 1 91.768
193750864 GT-AG 0 1.000000099473604e-05 48 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449895 34480489 17 1879889 1879936 Syncephalastrum racemosum 13706 CAG|GTAAGCTCTT...TGAGCCGAAAAA/CGCGAGCTCACA...AATAG|ATG 1 1 98.659

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
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