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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 34480488

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193750838 GT-AG 0 1.000000099473604e-05 58 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520473 34480488 1 3023337 3023394 Syncephalastrum racemosum 13706 ATG|GTAAAGAATT...GTTACCTAAAAC/ATTCTAGTCACA...ATCAG|GCA 1 1 0.869
193750839 GT-AG 0 0.0016925625373869 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520473 34480488 2 3022442 3022497 Syncephalastrum racemosum 13706 CCG|GTATGTCTGG...TTCTCATTGATG/GTCTTTCTCATT...TGTAG|CCC 0 1 13.438
193750840 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520473 34480488 3 3022233 3022283 Syncephalastrum racemosum 13706 CAT|GTAAGTGCTC...CATGCTCTAATT/CATGCTCTAATT...CCTAG|TAC 2 1 15.805
193750841 GT-AG 0 1.000000099473604e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520473 34480488 4 3021951 3022000 Syncephalastrum racemosum 13706 CTG|GTACGCGAAA...AGGGCACTAAAG/TAAAGGTTTATT...CGCAG|GGT 0 1 19.281
193750842 GT-AG 0 0.0077932782454191 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520473 34480488 5 3021755 3021805 Syncephalastrum racemosum 13706 AAA|GTATGATTTT...ACTTCCATGATC/CCATAGCTTACG...TACAG|ACT 1 1 21.453
193750843 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520473 34480488 6 3021511 3021563 Syncephalastrum racemosum 13706 AAG|GTACTACCAC...GAATCCTAATCG/AGAATCCTAATC...TCTAG|GAG 0 1 24.315
193750844 GT-AG 0 1.000000099473604e-05 62 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520473 34480488 7 3018301 3018362 Syncephalastrum racemosum 13706 TTT|GTAAGTCAGG...CAGATACTAATA/CAGATACTAATA...CATAG|CAT 1 1 71.476
193750845 GT-AG 0 1.000000099473604e-05 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520473 34480488 8 3017865 3017921 Syncephalastrum racemosum 13706 TGA|GTAAGTCGAG...TATGCTTTTCTA/CCGATATTCATG...TCCAG|AGA 2 1 77.154
193750846 GT-AG 0 7.307813674413435e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520473 34480488 9 3017549 3017602 Syncephalastrum racemosum 13706 CGT|GTAAGTATCC...TATGCCTAATCA/ATATGCCTAATC...ATCAG|ATG 0 1 81.079
193750847 GT-AG 0 3.4950344043893576e-05 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA520473 34480488 10 3017145 3017200 Syncephalastrum racemosum 13706 AAG|GTATGTAAAC...AAAGTCTCAACT/AAAAGTCTCAAC...CTTAG|GCA 0 1 86.292

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 27.738ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)