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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

14 rows where transcript_id = 34480486

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193750819 GT-AG 0 2.1064331564062264e-05 74 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 1 3402720 3402793 Syncephalastrum racemosum 13706 CAA|GTACGTGAAT...TTGTCGTTAACT/ACTCTTTTCACT...AAAAG|GAT 2 1 2.18
193750820 GT-AG 0 0.000492460425757 59 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 2 3402545 3402603 Syncephalastrum racemosum 13706 TTG|GTAACGTGAC...CGCTCCTAAACG/CCGCTCCTAAAC...CACAG|TGC 1 1 3.812
193750821 GT-AG 0 0.0010390908317943 99 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 3 3401727 3401825 Syncephalastrum racemosum 13706 AAG|GTATGTCTTA...CTGACATTAATT/CTGACATTAATT...TACAG|GCA 0 1 13.924
193750822 GT-AG 0 0.0001828306191783 63 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 4 3401110 3401172 Syncephalastrum racemosum 13706 TGG|GTATGTCGAT...TAAACTTTGCTT/ACTTCTCTGAAG...TACAG|TTA 2 1 21.716
193750823 GT-AG 0 1.3836910200423986e-05 58 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 5 3400715 3400772 Syncephalastrum racemosum 13706 GTG|GTATGGGAAA...AAGCTTTTAATT/TTTTAATTAACC...CGCAG|TTT 0 1 26.456
193750824 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 6 3399705 3399753 Syncephalastrum racemosum 13706 AAC|GTAAAGGCAC...TTTCCCTTTACT/CCTTTACTGATT...TTTAG|AGA 1 1 39.972
193750825 GT-AG 0 0.0006581807655025 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 7 3399068 3399121 Syncephalastrum racemosum 13706 ATA|GTAAGCTGGA...TCTCTGTTAACA/TCTCTGTTAACA...TTTAG|TTT 2 1 48.172
193750826 GT-AG 0 0.0001422232407412 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 8 3398848 3398901 Syncephalastrum racemosum 13706 GAA|GTAAATTTCC...AATGTTTCAATA/CGATATCTCACA...TGCAG|GAA 0 1 50.506
193750827 GT-AG 0 0.0002083917251113 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 9 3397859 3397911 Syncephalastrum racemosum 13706 AAA|GTATGTCGAG...ATATGCTTATAT/CATATGCTTATA...TTTAG|GCG 0 1 63.671
193750828 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 10 3397528 3397591 Syncephalastrum racemosum 13706 ATT|GTAAGTGACT...GACGCCATAACA/TTGATATTCATT...ACCAG|CTT 0 1 67.426
193750829 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 11 3396944 3396997 Syncephalastrum racemosum 13706 GAG|GTAAAATCAT...ATTTTGCTAACA/ATTTTGCTAACA...TTCAG|AAT 2 1 74.88
193750830 GT-AG 0 0.0003278194492139 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 12 3396462 3396511 Syncephalastrum racemosum 13706 ACA|GTACGTTCGT...GGATACTTACAC/AGGATACTTACA...TGTAG|GAT 2 1 80.956
193750831 GT-AG 0 0.0008928021437869 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 13 3396377 3396427 Syncephalastrum racemosum 13706 AAG|GTATGTTATT...GCAACATTAAAC/GCAACATTAAAC...CGTAG|TTT 0 1 81.435
193750832 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 14 3396155 3396203 Syncephalastrum racemosum 13706 GAC|GTAAGGGAAT...AAATCCTAAATT/GAAATCCTAAAT...TCTAG|GCG 2 1 83.868

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 26.154ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)