introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
14 rows where transcript_id = 34480486
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193750819 | GT-AG | 0 | 2.1064331564062264e-05 | 74 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 | 1 | 3402720 | 3402793 | Syncephalastrum racemosum 13706 | CAA|GTACGTGAAT...TTGTCGTTAACT/ACTCTTTTCACT...AAAAG|GAT | 2 | 1 | 2.18 |
193750820 | GT-AG | 0 | 0.000492460425757 | 59 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 | 2 | 3402545 | 3402603 | Syncephalastrum racemosum 13706 | TTG|GTAACGTGAC...CGCTCCTAAACG/CCGCTCCTAAAC...CACAG|TGC | 1 | 1 | 3.812 |
193750821 | GT-AG | 0 | 0.0010390908317943 | 99 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 | 3 | 3401727 | 3401825 | Syncephalastrum racemosum 13706 | AAG|GTATGTCTTA...CTGACATTAATT/CTGACATTAATT...TACAG|GCA | 0 | 1 | 13.924 |
193750822 | GT-AG | 0 | 0.0001828306191783 | 63 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 | 4 | 3401110 | 3401172 | Syncephalastrum racemosum 13706 | TGG|GTATGTCGAT...TAAACTTTGCTT/ACTTCTCTGAAG...TACAG|TTA | 2 | 1 | 21.716 |
193750823 | GT-AG | 0 | 1.3836910200423986e-05 | 58 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 | 5 | 3400715 | 3400772 | Syncephalastrum racemosum 13706 | GTG|GTATGGGAAA...AAGCTTTTAATT/TTTTAATTAACC...CGCAG|TTT | 0 | 1 | 26.456 |
193750824 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 | 6 | 3399705 | 3399753 | Syncephalastrum racemosum 13706 | AAC|GTAAAGGCAC...TTTCCCTTTACT/CCTTTACTGATT...TTTAG|AGA | 1 | 1 | 39.972 |
193750825 | GT-AG | 0 | 0.0006581807655025 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 | 7 | 3399068 | 3399121 | Syncephalastrum racemosum 13706 | ATA|GTAAGCTGGA...TCTCTGTTAACA/TCTCTGTTAACA...TTTAG|TTT | 2 | 1 | 48.172 |
193750826 | GT-AG | 0 | 0.0001422232407412 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 | 8 | 3398848 | 3398901 | Syncephalastrum racemosum 13706 | GAA|GTAAATTTCC...AATGTTTCAATA/CGATATCTCACA...TGCAG|GAA | 0 | 1 | 50.506 |
193750827 | GT-AG | 0 | 0.0002083917251113 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 | 9 | 3397859 | 3397911 | Syncephalastrum racemosum 13706 | AAA|GTATGTCGAG...ATATGCTTATAT/CATATGCTTATA...TTTAG|GCG | 0 | 1 | 63.671 |
193750828 | GT-AG | 0 | 1.000000099473604e-05 | 64 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 | 10 | 3397528 | 3397591 | Syncephalastrum racemosum 13706 | ATT|GTAAGTGACT...GACGCCATAACA/TTGATATTCATT...ACCAG|CTT | 0 | 1 | 67.426 |
193750829 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 | 11 | 3396944 | 3396997 | Syncephalastrum racemosum 13706 | GAG|GTAAAATCAT...ATTTTGCTAACA/ATTTTGCTAACA...TTCAG|AAT | 2 | 1 | 74.88 |
193750830 | GT-AG | 0 | 0.0003278194492139 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 | 12 | 3396462 | 3396511 | Syncephalastrum racemosum 13706 | ACA|GTACGTTCGT...GGATACTTACAC/AGGATACTTACA...TGTAG|GAT | 2 | 1 | 80.956 |
193750831 | GT-AG | 0 | 0.0008928021437869 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 | 13 | 3396377 | 3396427 | Syncephalastrum racemosum 13706 | AAG|GTATGTTATT...GCAACATTAAAC/GCAACATTAAAC...CGTAG|TTT | 0 | 1 | 81.435 |
193750832 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560142 34480486 | 14 | 3396155 | 3396203 | Syncephalastrum racemosum 13706 | GAC|GTAAGGGAAT...AAATCCTAAATT/GAAATCCTAAAT...TCTAG|GCG | 2 | 1 | 83.868 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);