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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

23 rows where transcript_id = 34480484

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193750790 GT-AG 0 1.000000099473604e-05 92 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 1 4828781 4828872 Syncephalastrum racemosum 13706 CAG|GTAATGGAAA...AGACTCATACCT/TATAGACTCATA...TGCAG|GAG 1 1 1.035
193750791 GT-AG 0 1.2332815302306104e-05 69 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 2 4828634 4828702 Syncephalastrum racemosum 13706 AAG|GTAAGTTTTT...GGCGGTTTAACA/AGACTTCTCAGA...ACAAG|GTC 1 1 1.867
193750792 GT-AG 0 1.000000099473604e-05 80 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 3 4828441 4828520 Syncephalastrum racemosum 13706 AAT|GTGAGTTCTG...AGGATCATAGTA/ATCATAGTAACA...TGTAG|ACG 0 1 3.072
193750793 GT-AG 0 1.000000099473604e-05 61 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 4 4828074 4828134 Syncephalastrum racemosum 13706 AAG|GTAAAAACAT...CTCATCTTATTC/GCTCATCTTATT...TTTAG|TTG 0 1 6.336
193750794 GT-AG 0 3.9367018044281934e-05 61 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 5 4827914 4827974 Syncephalastrum racemosum 13706 ATG|GTAAGCCTTT...GGTAACTTAGTC/TGGTAACTTAGT...TTTAG|ATT 0 1 7.392
193750795 GT-AG 0 1.000000099473604e-05 82 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 6 4827199 4827280 Syncephalastrum racemosum 13706 CAG|GTAAGGAAAA...GACGCCTTTTTG/GTATGGTTCACC...CTTAG|GGA 0 1 14.144
193750796 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 7 4827032 4827087 Syncephalastrum racemosum 13706 GAT|GTAAGTTGAA...AATGCAATATCA/AGTATATTCACG...GTTAG|ACA 0 1 15.328
193750797 GT-AG 0 0.0002906990245503 58 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 8 4826369 4826426 Syncephalastrum racemosum 13706 GGA|GTAAGTTACT...TTTCTTTTATTC/CTTTCTTTTATT...TCTAG|CTG 2 1 21.781
193750798 GT-AG 0 0.0011661781473681 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 9 4823207 4823262 Syncephalastrum racemosum 13706 GCG|GTATGTGTCT...GGTTACTTACCC/AGGTTACTTACC...TGCAG|CTT 0 1 54.912
193750799 GT-AG 0 1.000000099473604e-05 63 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 10 4823027 4823089 Syncephalastrum racemosum 13706 TCG|GTAAGCAAAA...ACATCCTTGCTC/TCCTTGCTCACT...TACAG|CTC 0 1 56.16
193750800 GT-AG 0 0.0009914587449523 61 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 11 4822549 4822609 Syncephalastrum racemosum 13706 GAG|GTAACGTATA...TATACTTTATCA/ATATACTTTATC...GACAG|ACG 0 1 60.608
193750801 GT-AG 0 7.1583721400209e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 12 4821788 4821839 Syncephalastrum racemosum 13706 CAG|GTACATCTTT...GAGCTCGTAGCG/CGTGATCTAACG...GACAG|AAT 1 1 68.171
193750802 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 13 4821618 4821666 Syncephalastrum racemosum 13706 TAT|GTAAGACCGA...ATGTATTCGACT/ATTCGACTGACT...AACAG|TGA 2 1 69.461
193750803 GT-AG 0 1.000000099473604e-05 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 14 4821398 4821454 Syncephalastrum racemosum 13706 AAG|GTAAGAGAAA...ACATCCTTATTT/CACATCCTTATT...TATAG|TCT 0 1 71.2
193750804 GT-AG 0 1.000000099473604e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 15 4820959 4821008 Syncephalastrum racemosum 13706 ATG|GTAAGTACAT...TAGGACTAACAT/ATAGGACTAACA...GCCAG|GTC 2 1 75.349
193750805 GT-AG 0 1.000000099473604e-05 61 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 16 4820696 4820756 Syncephalastrum racemosum 13706 GCG|GTACGAGGAC...AAATTCTCGAAT/CTCGAATTGACC...TCTAG|GAT 0 1 77.504
193750806 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 17 4820440 4820488 Syncephalastrum racemosum 13706 CAG|GTAGGTTTGA...TGTGGCTGACCG/ATGTGGCTGACC...TTTAG|GGA 0 1 79.712
193750807 GT-AG 0 1.000000099473604e-05 59 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 18 4820114 4820172 Syncephalastrum racemosum 13706 CAG|GTGAGCTTCC...AATACCTTATAT/AAATACCTTATA...TATAG|GAA 0 1 82.56
193750808 GT-AG 0 0.0001965395480964 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 19 4819841 4819896 Syncephalastrum racemosum 13706 ATT|GTAAGTTCCG...GATGGCTTAACC/GATGGCTTAACC...TATAG|CCC 1 1 84.875
193750809 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 20 4819501 4819554 Syncephalastrum racemosum 13706 AAG|GTAAGTGAAA...GGATACTTATCA/GGGATACTTATC...CATAG|ACC 2 1 87.925
193750810 GT-AG 0 1.000000099473604e-05 74 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 21 4819360 4819433 Syncephalastrum racemosum 13706 AAT|GTAAATGAAT...CGGCCATTCACC/CGGCCATTCACC...ATTAG|GCT 0 1 88.64
193750811 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 22 4819145 4819208 Syncephalastrum racemosum 13706 CAG|GTAAAGCACG...TATTCTATATCA/TGGATACTGATG...CATAG|TTG 1 1 90.251
193750812 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560572 34480484 23 4818971 4819034 Syncephalastrum racemosum 13706 CGG|GTGAGTATTA...TATGCTAAAGTA/GATATGCTAAAG...TACAG|GGC 0 1 91.424

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 26.728ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)