WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 34283787

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
192054429	GT-AG	1.000000099473604e-05	1910	rna-XM_014884800.1 34283787	2	9887478	9889387	Sturnus vulgaris 9172	AAG\|GTTGAATTTA...ATGCTCTTACTA/AATGCTCTTACT...TGTAG\|CTG	1	1	38.59
192054430	GT-AG	8.80346955294207e-05	1353	rna-XM_014884800.1 34283787	3	9885966	9887318	Sturnus vulgaris 9172	ACT\|GTAAGTATTC...CATGCTTTTGCT/TGAAAACTGATG...TGCAG\|CTT	1	1	53.34
192054431	GT-AG	1.000000099473604e-05	1349	rna-XM_014884800.1 34283787	4	9884551	9885899	Sturnus vulgaris 9172	AAG\|GTGAGACCAG...ATATTTTTCTCT/GGATTATTAAGT...AACAG\|AAA	1	1	59.462
192054432	GT-AG	1.000000099473604e-05	160	rna-XM_014884800.1 34283787	5	9884293	9884452	Sturnus vulgaris 9172	AAT\|GTAAGGAAAT...TTTTTTCTAATT/TTTTTTCTAATT...TTCAG\|GGT	0	1	68.553
192054433	GT-AG	1.000000099473604e-05	388	rna-XM_014884800.1 34283787	6	9883779	9884166	Sturnus vulgaris 9172	TGG\|GTAAGACTCT...ATTTCTCTGCTT/TGTGGACTAATC...TGCAG\|AAT	0	1	80.241
192054434	GT-AG	1.000000099473604e-05	91	rna-XM_014884800.1 34283787	7	9883621	9883711	Sturnus vulgaris 9172	TCG\|GTAAGCAAAC...CAGTTCTCATTG/TCAGTTCTCATT...AACAG\|AAA	1	1	86.456
192054555	GT-AG	0.968933741078132	471	rna-XM_014884800.1 34283787	1	9889777	9890247	Sturnus vulgaris 9172	CGG\|GTATTCTGGG...ATGTTCTTAATT/ATGTTCTTAATT...TTCAG\|TTG		0	11.781

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);