WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 34283774

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
192054345	GT-AG	1.000000099473604e-05	4523	rna-XM_014873615.1 34283774	1	3319723	3324245	Sturnus vulgaris 9172	CAG\|GTGGGGAAGC...ATTTTTTTATTG/TATTTTTTTATT...TCTAG\|CAT	2	1	20.173
192054346	GT-AG	0.0567853552435465	1179	rna-XM_014873615.1 34283774	2	3318466	3319644	Sturnus vulgaris 9172	TCG\|GTATGCTGTT...AAATTGTTGAAC/AAATTGTTGAAC...CTCAG\|AAT	2	1	26.926
192054347	GT-AG	1.000000099473604e-05	1209	rna-XM_014873615.1 34283774	3	3317172	3318380	Sturnus vulgaris 9172	ATG\|GTAAGTTGCC...TTGCCAATATAA/GCCAATATAATA...TCCAG\|GAG	0	1	34.286
192054348	GT-AG	1.000000099473604e-05	471	rna-XM_014873615.1 34283774	4	3316596	3317066	Sturnus vulgaris 9172	AAG\|GTTGGTGTGA...ATGCTCTTATAA/TTATAATTTATC...TGTAG\|CAT	0	1	43.377
192054349	GT-AG	1.000000099473604e-05	3716	rna-XM_014873615.1 34283774	5	3312730	3316445	Sturnus vulgaris 9172	AAG\|GTAAAACCTT...AAGTGTTTATTC/TATTCTCTCACA...CTCAG\|GAT	0	1	56.364
192054350	GT-AG	2.9746240626133334e-05	1252	rna-XM_014873615.1 34283774	6	3311395	3312646	Sturnus vulgaris 9172	CAG\|GTATGGTATT...ATAGCTTTGCTA/TCTGCATTCATG...TTCAG\|AAC	2	1	63.55
192054351	GT-AG	1.000000099473604e-05	887	rna-XM_014873615.1 34283774	7	3310343	3311229	Sturnus vulgaris 9172	AAG\|GTAAGTTACT...ATATCTTTATTG/AATATCTTTATT...TCAAG\|GCT	2	1	77.835
192054352	GT-AG	0.0053496986580333	1674	rna-XM_014873615.1 34283774	8	3308561	3310234	Sturnus vulgaris 9172	AAG\|GTATGCTACA...TGTTTTGTAACC/GTTGCACTCACA...TGCAG\|GTG	2	1	87.186

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);