WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 34283766

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
192054307	GT-AG	0.000204302758902	80	rna-XM_014871520.1 34283766	1	1715428	1715507	Sturnus vulgaris 9172	CAG\|GTATGTCTGA...ACACCTTTCTCT/AGCCAATTAACA...AACAG\|AAC	0	1	5.206
192054308	GT-AG	1.000000099473604e-05	656	rna-XM_014871520.1 34283766	2	1715704	1716359	Sturnus vulgaris 9172	AAA\|GTAAGGCAAA...ACTCTTGTAATT/TTAAACCTAACT...TATAG\|TTG	1	1	19.378
192054309	GT-AG	1.000000099473604e-05	497	rna-XM_014871520.1 34283766	3	1716443	1716939	Sturnus vulgaris 9172	AAG\|GTAAGTTCTT...ATACTTTTAGTA/GTAGCTCTCACT...GGCAG\|GTT	0	1	25.38
192054310	GT-AG	1.000000099473604e-05	325	rna-XM_014871520.1 34283766	4	1717226	1717550	Sturnus vulgaris 9172	TAG\|GTAAGACCAA...GATCTCTTAAGT/GATCTCTTAAGT...CCTAG\|AGA	1	1	46.059
192054311	GT-AG	0.000164194107376	781	rna-XM_014871520.1 34283766	5	1717736	1718516	Sturnus vulgaris 9172	CTG\|GTAAGTTTAA...ACTTCCTTATTT/TACTTCCTTATT...TTCAG\|ATC	0	1	59.436
192054312	GT-AG	1.000000099473604e-05	653	rna-XM_014871520.1 34283766	6	1718652	1719304	Sturnus vulgaris 9172	GAG\|GTAAATAGAT...GTGCTGTTAACG/AAGACACTAATG...TCTAG\|CAC	0	1	69.197
192054313	GT-AG	1.000000099473604e-05	6337	rna-XM_014871520.1 34283766	7	1719596	1725932	Sturnus vulgaris 9172	CTG\|GTAGGTCCCT...TTACTTTTAAAT/TTTAGTTTTACT...CACAG\|GTT	0	1	90.239

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);