WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 34243622

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
191722510	GT-AG	1.000000099473604e-05	18829	rna-XM_009672862.1 34243622	1	13085	31913	Struthio camelus 8801	GAG\|GTAGGCACCG...GTTTCCTCCTCT/CAGCGTCTCACC...TCCAG\|ATT	1	1	33.993
191722511	GT-AG	1.000000099473604e-05	2411	rna-XM_009672862.1 34243622	2	31986	34396	Struthio camelus 8801	TGG\|GTAAGTGGGG...CCTCTCTTTCCT/CCACCTCTCAGT...CACAG\|ATT	1	1	39.934
191722512	GT-AG	1.000000099473604e-05	297	rna-XM_009672862.1 34243622	3	34472	34768	Struthio camelus 8801	GAA\|GTGAGTACCG...CCCCTCCTGACG/CCCCTCCTGACG...TCCAG\|CAC	1	1	46.122
191722513	GT-AG	1.000000099473604e-05	1036	rna-XM_009672862.1 34243622	4	34893	35928	Struthio camelus 8801	CGG\|GTAGGTGCCG...TGACCCTTCCCC/GCCAGCCTGACC...CCCAG\|GAG	2	1	56.353
191722514	GT-AG	1.000000099473604e-05	3763	rna-XM_009672862.1 34243622	5	36054	39816	Struthio camelus 8801	GGG\|GTAGGTACCG...CTCAGTGTAACT/CTCAGTGTAACT...CCCAG\|GCA	1	1	66.667
191722515	GT-AG	1.000000099473604e-05	310	rna-XM_009672862.1 34243622	6	39946	40255	Struthio camelus 8801	GCG\|GTGAGTGCGC...CTCCTCTTCCTC/CTCGCAGTGACG...TCCAG\|GTA	1	1	77.31
191722516	GT-AG	1.000000099473604e-05	4329	rna-XM_009672862.1 34243622	7	40368	44696	Struthio camelus 8801	TGT\|GTGAGGAGAG...GGTTCATTTGCG/GGGTGGTTCATT...CCCAG\|CCT	2	1	86.551
191722517	GT-AG	1.000000099473604e-05	116	rna-XM_009672862.1 34243622	8	44738	44853	Struthio camelus 8801	TTC\|GTGGGATCCT...GGTTCATTTGCG/GGGTGGTTCATT...ACGAG\|CTC	1	1	89.934
191722518	GT-AG	1.000000099473604e-05	4313	rna-XM_009672862.1 34243622	9	44958	49270	Struthio camelus 8801	CAG\|GTGAGAGCCG...TCTCTCTTTTCT/GGAGCACTAACG...CTCAG\|TCC	0	1	98.515

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);