WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 34243601

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
191722371	GT-AG	1.000000099473604e-05	88	rna-XM_009670717.1 34243601	1	33833	33920	Struthio camelus 8801	GTG\|GTGAGCCTGG...CTTCCCTTGTTG/CCAGCCCCAACT...TTCAG\|AGC	1	1	24.086
191722372	GT-AG	1.000000099473604e-05	666	rna-XM_009670717.1 34243601	2	33984	34649	Struthio camelus 8801	CTG\|GTAAGAGCCT...TGGTCGGTAACG/TCATAAGTGACA...GCCAG\|GTG	1	1	28.433
191722373	GT-AG	1.000000099473604e-05	786	rna-XM_009670717.1 34243601	3	34956	35741	Struthio camelus 8801	CCG\|GTGAGACAGC...GCCGCCCTGACC/GCCGCCCTGACC...TGCAG\|GCT	1	1	49.551
191722374	GT-AG	4.346022988452633e-05	248	rna-XM_009670717.1 34243601	4	36027	36274	Struthio camelus 8801	TGT\|GTAAGCAAGA...CGGCTCATGACA/CGGCGGCTCATG...TCCAG\|GCC	1	1	69.22
191722375	GT-AG	1.000000099473604e-05	527	rna-XM_009670717.1 34243601	5	36407	36933	Struthio camelus 8801	AAA\|GTAAGTGACA...CTCCCCTTCTTT/GGTCCTATCACA...TCCAG\|TCT	1	1	78.33
191722376	GT-AG	1.000000099473604e-05	514	rna-XM_009670717.1 34243601	6	36988	37501	Struthio camelus 8801	ACG\|GTGAGGAGCA...CAGTCCTTAACG/TCAGTCCTTAAC...TCCAG\|TTT	1	1	82.057
191722377	GT-AG	1.000000099473604e-05	246	rna-XM_009670717.1 34243601	7	37625	37870	Struthio camelus 8801	CAG\|GTAAGGCATC...CACGCCATAGTT/CCATAGTTTATT...CACAG\|CTC	1	1	90.545
191722426	GT-AG	1.000000099473604e-05	202	rna-XM_009670717.1 34243601	8	37971	38172	Struthio camelus 8801	GAG\|GTAAGACCAT...ATTTTCTTGACC/ATTTTCTTGACC...TGCAG\|ACA		0	97.447

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);