introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 34243563

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
191722028 GT-AG 0 1.321495944114612e-05 147 rna-XM_009666501.1 34243563 2 384766 384912 Struthio camelus 8801 TTG|GTACAGTGAT...GTTTCCCTGTCT/TCTCTGTTCACA...ATCAG|AGA 0 1 19.213
191722029 GT-AG 0 1.000000099473604e-05 294 rna-XM_009666501.1 34243563 3 384417 384710 Struthio camelus 8801 CAT|GTAATGGCTA...CACTCCCAAGCA/CAAGTGTTCACT...CTGAG|TAA 1 1 21.335
191722030 GT-AG 0 1.000000099473604e-05 179 rna-XM_009666501.1 34243563 4 383276 383454 Struthio camelus 8801 AAG|GTAAAGGGTA...CTTTCCTTTGTG/AGCGAAGTCATG...CCCAG|ATT 0 1 58.449
191722031 GT-AG 0 1.000000099473604e-05 540 rna-XM_009666501.1 34243563 5 382523 383062 Struthio camelus 8801 CTG|GTAGGGCGCG...CAGCCCCTGCCT/GGTTTCTGCAGC...GGCAG|GAC 0 1 66.667
191722032 GT-AG 0 1.000000099473604e-05 500 rna-XM_009666501.1 34243563 6 381931 382430 Struthio camelus 8801 GAG|GTAGGAACTT...AACCCTTTCATC/AACCCTTTCATC...GCCAG|GTT 2 1 70.216
191722033 GT-AG 0 1.000000099473604e-05 131 rna-XM_009666501.1 34243563 7 381564 381694 Struthio camelus 8801 GGG|GTGCGGGCTC...GCACTTTTAATT/TTGCCATTCACT...TCTAG|AAA 1 1 79.321
191722034 GT-AG 0 1.000000099473604e-05 518 rna-XM_009666501.1 34243563 8 380952 381469 Struthio camelus 8801 CAG|GTAGGTCCTG...GATGCTTTCTCC/TCTCCTCTCACC...ACCAG|CCT 2 1 82.948
191722035 GT-AG 0 1.000000099473604e-05 96 rna-XM_009666501.1 34243563 9 380666 380761 Struthio camelus 8801 AAG|GTAAGAGATG...ACAGCCTGAGCA/CACAGCCTGAGC...CACAG|GAG 0 1 90.278
191722036 GT-AG 0 1.000000099473604e-05 600 rna-XM_009666501.1 34243563 10 379944 380543 Struthio camelus 8801 CAA|GTAAGTAGGA...GAAAATTTAACT/CAGTGTCTCATA...CACAG|ATG 2 1 94.985

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);