WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 34243548

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
191721848	GT-AG	1.000000099473604e-05	1178	rna-XM_009670518.1 34243548	1	29081	30258	Struthio camelus 8801	AGG\|GTGAGTGGTA...TGAATCTTAATT/AAGTTTTTAACC...TATAG\|TTT	2	1	7.369
191721849	GT-AG	1.000000099473604e-05	968	rna-XM_009670518.1 34243548	2	30372	31339	Struthio camelus 8801	TCG\|GTGAGTTCCT...TCATTTTTACCT/TTCATTTTTACC...CTCAG\|ACC	1	1	13.874
191721850	GT-AG	1.000000099473604e-05	999	rna-XM_009670518.1 34243548	3	31465	32463	Struthio camelus 8801	AAG\|GTAACAAAGT...TGTTGTTTATCT/TTGTTGTTTATC...GGTAG\|TTC	0	1	21.071
191721851	GT-AG	7.52559029555407e-05	444	rna-XM_009670518.1 34243548	4	32568	33011	Struthio camelus 8801	GAG\|GTATTTGATT...GAGATTTGAGCT/TTTGAGCTGAGC...CACAG\|GAA	2	1	27.058
191721852	GT-AG	1.000000099473604e-05	768	rna-XM_009670518.1 34243548	5	33167	33934	Struthio camelus 8801	ACG\|GTAGGAAGCC...CTGACGTTGCCT/AGAGAGCTGACG...TGCAG\|GGA	1	1	35.982
191721853	GT-AG	3.836539314871668e-05	742	rna-XM_009670518.1 34243548	6	34064	34805	Struthio camelus 8801	CGG\|GTAAGCTCAG...CCCTTCTTGTCT/TACATGTTGACT...GCCAG\|AGG	1	1	43.408
191721854	GT-AG	1.000000099473604e-05	1123	rna-XM_009670518.1 34243548	7	34944	36066	Struthio camelus 8801	CAG\|GTGGGTTGAG...AGACTCTTGGCC/GAGTGTCTGACA...CACAG\|GGA	1	1	51.353
191721855	GT-AG	1.96546968251232e-05	1148	rna-XM_009670518.1 34243548	8	36205	37352	Struthio camelus 8801	CAG\|GTACAGTCAA...CATTGCTTAGCT/ACATTGCTTAGC...TGCAG\|ACC	1	1	59.298

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);