introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 34091316

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
190849903 GT-AG 0 1.000000099473604e-05 1674 rna-XM_013260853.1 34091316 1 850426 852099 Stomoxys calcitrans 35570 TTG|GTAAGTGAAT...TAATCTCTGATC/ATTAAACTTACA...TCTAG|AAA 0 1 7.881
190849904 GT-AG 0 0.0013803507349355 67 rna-XM_013260853.1 34091316 2 850211 850277 Stomoxys calcitrans 35570 AAA|GTAAGCATTG...TAAACTTTAACT/TAAACTTTAACT...TTCAG|AGG 1 1 13.135
190849905 GT-AG 0 1.000000099473604e-05 60 rna-XM_013260853.1 34091316 3 849579 849638 Stomoxys calcitrans 35570 GAG|GTAATTACGT...GCTGCTTCAGAA/AGCTGCTTCAGA...TTCAG|GTG 0 1 33.44
190849906 GT-AG 0 1.000000099473604e-05 68 rna-XM_013260853.1 34091316 4 849181 849248 Stomoxys calcitrans 35570 ACA|GTAAGGGACA...GAATTATTATTT/TTTAGAATTATT...TTTAG|GTG 0 1 45.154
190849907 GT-AG 0 1.000000099473604e-05 141 rna-XM_013260853.1 34091316 5 848938 849078 Stomoxys calcitrans 35570 CTG|GTAAGTTATG...AATGTGTTGATG/AATGTGTTGATG...TAAAG|TCA 0 1 48.775
190849908 GT-AG 0 1.000000099473604e-05 61 rna-XM_013260853.1 34091316 6 848078 848138 Stomoxys calcitrans 35570 GCG|GTAGGTACCT...TACATCTAAATT/GTTCCACTCATA...TCCAG|AGG 1 1 77.139
190849909 GT-AG 0 0.0008110971082825 58 rna-XM_013260853.1 34091316 7 847854 847911 Stomoxys calcitrans 35570 ACG|GTAAACTGAC...AACTTTTTATCT/CAACTTTTTATC...TACAG|ATG 2 1 83.032
190849910 GT-AG 0 1.000000099473604e-05 68 rna-XM_013260853.1 34091316 8 847421 847488 Stomoxys calcitrans 35570 AAG|GTAAAATTCC...CCTTTTGTATTT/GTGGGTTTCAAA...TGCAG|AAA 1 1 95.989

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);