introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 34091263

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
190849655 GT-AG 0 1.10111260799031e-05 4267 rna-XM_013245597.1 34091263 1 43683 47949 Stomoxys calcitrans 35570 GCG|GTAAGTTCGA...GTTCTCTAAAAA/CAAAAATTGAAT...TCCAG|GTT 1 1 5.456
190849656 GT-AG 0 1.000000099473604e-05 1027 rna-XM_013245597.1 34091263 2 42463 43489 Stomoxys calcitrans 35570 AAG|GTGAAGGAAA...TTTTCTTTATTT/TATTTATTAATT...TCCAG|ATG 2 1 15.985
190849657 GT-AG 0 1.000000099473604e-05 1698 rna-XM_013245597.1 34091263 3 40128 41825 Stomoxys calcitrans 35570 ACG|GTGAGTTGGA...TTTTTTTTGTTA/TTTTTTGTTATA...TACAG|GTT 0 1 50.736
190849658 GT-AG 0 1.000000099473604e-05 58 rna-XM_013245597.1 34091263 4 39920 39977 Stomoxys calcitrans 35570 CAT|GTAAGTCAAA...TTTCTTTTATTT/TTTTCTTTTATT...TTAAG|GAT 0 1 58.92
190849659 GT-AG 0 1.904423960392129e-05 78 rna-XM_013245597.1 34091263 5 39709 39786 Stomoxys calcitrans 35570 CAG|GTATGAATAA...ATATTTTTACCG/CATATTTTTACC...AACAG|GAA 1 1 66.176
190849660 GT-AG 0 1.000000099473604e-05 106 rna-XM_013245597.1 34091263 6 39549 39654 Stomoxys calcitrans 35570 ATG|GTAGGTAGTT...CTAATTATATCC/TTTTGGCTAATT...TGCAG|ATT 1 1 69.122
190849661 GT-AG 0 2.4675109426968663e-05 190 rna-XM_013245597.1 34091263 7 39116 39305 Stomoxys calcitrans 35570 TGG|GTAAGTTGTT...ATTTCCTTGTTT/TTTTGTATCATT...TGCAG|TGG 1 1 82.379

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);