WtMTA: introns: 6 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 34009274

descending

id ▼	dinucleotide_pair	is_minor	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
190420536	GT-AG	0	1.000000099473604e-05	2742	rna-XM_035351062.1 34009274	1	102162	104903	Stegodyphus dumicola 202533	AAG\|GTTTTATACT...TTATTTTTGTAT/ACACATTTCAAT...TTTAG\|GTT	1	1	14.946
190420537	GT-AG	0	1.000000099473604e-05	2901	rna-XM_035351062.1 34009274	2	99088	101988	Stegodyphus dumicola 202533	GAA\|GTTAATACTC...TTTTTTTTATTT/ATTTTTTTTATT...TTCAG\|CAT	0	1	33.548
190420538	GT-AG	0	1.000000099473604e-05	131	rna-XM_035351062.1 34009274	3	98831	98961	Stegodyphus dumicola 202533	TAT\|GTAAGTGGAG...GAAGTTTTAATA/TATGTACTTATA...TTTAG\|CTT	0	1	47.097
190420539	GT-AG	0	5.3974373348514216e-05	3108	rna-XM_035351062.1 34009274	4	95579	98686	Stegodyphus dumicola 202533	AAT\|GTAAGATTAT...TAATTTTTAATC/TAATTTTTAATC...TTCAG\|ATT	0	1	62.581
190420540	GT-AG	0	3.026338921622647e-05	2941	rna-XM_035351062.1 34009274	5	92556	95496	Stegodyphus dumicola 202533	ATG\|GTAAGTTATG...ATAATCTTGAAT/TTTATTCTAAAT...TTCAG\|TCA	1	1	71.398
190420541	GT-AG	1	99.70101634308352	13602	rna-XM_035351062.1 34009274	6	78848	92449	Stegodyphus dumicola 202533	CTT\|GTATCCTTCT...TTGCTCTTAACT/TTGCTCTTAACT...CTTAG\|ATA	2	1	82.796

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);