WtMTA: introns: 5 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

5 rows where transcript_id = 3395337

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
16698854	GT-AG	3.570520632812856e-05	6149	rna-gnl\|WGS:VXAK\|AREINT_R13632_mrna 3395337	1	305099	311247	Arenaria interpres 54971	GAG\|GTAGGCCTCT...CATTCCTTGTTG/TAATCACTCATT...TGTAG\|GGA	1	1	13.817
16698855	GT-AG	1.000000099473604e-05	40080	rna-gnl\|WGS:VXAK\|AREINT_R13632_mrna 3395337	2	264914	304993	Arenaria interpres 54971	GAA\|GTGAGTATTA...ACGCTTTTATTT/TTTTATTTTATG...TCCAG\|GGC	1	1	22.884
16698856	GT-AG	1.000000099473604e-05	9800	rna-gnl\|WGS:VXAK\|AREINT_R13632_mrna 3395337	3	254940	264739	Arenaria interpres 54971	CAG\|GTAAGAGACA...TTCCTTTTAAAA/TTTAAAATAATT...CCTAG\|ACC	1	1	37.91
16698857	GT-AG	0.0012873100420549	3872	rna-gnl\|WGS:VXAK\|AREINT_R13632_mrna 3395337	4	250897	254768	Arenaria interpres 54971	ACC\|GTGTTTTGCC...CAGGACTTGACC/CAGGACTTGACC...TGCAG\|GTG	1	1	52.677
16698858	GT-AG	1.000000099473604e-05	21691	rna-gnl\|WGS:VXAK\|AREINT_R13632_mrna 3395337	5	229134	250824	Arenaria interpres 54971	TAG\|GTGAGTGGTT...TTTGTTATAATT/ATGGTATTTACA...TTTAG\|GTG	1	1	58.895

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);