introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

5 rows where transcript_id = 33869959

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
189664004 GT-AG 0 1.000000099473604e-05 71 rna-XM_016748567.1 33869959 1 611375 611445 Spizellomyces punctatus 109760 CAG|GTAAAAGAAC...TAAACTTTCACC/TAAACTTTCACC...TTTAG|GCT 0 1 36.562
189664005 GT-AG 0 1.000000099473604e-05 71 rna-XM_016748567.1 33869959 2 611798 611868 Spizellomyces punctatus 109760 CGA|GTAAGTCTAC...GGTTTCTCACAT/AGGTTTCTCACA...TTTAG|ACG 1 1 48.785
189664006 GT-AG 0 1.000000099473604e-05 58 rna-XM_016748567.1 33869959 3 612575 612632 Spizellomyces punctatus 109760 TTG|GTGAGTTTTT...AAACCATTAACT/CTTTGTATCATA...GCCAG|GTC 2 1 73.299
189664007 GT-AG 0 0.0018527425741056 64 rna-XM_016748567.1 33869959 4 612796 612859 Spizellomyces punctatus 109760 ATG|GTATGTATCT...TGATTTTTATCA/GTGATTTTTATC...GTTAG|GAC 0 1 78.958
189664008 GT-AG 0 0.0003642891079438 66 rna-XM_016748567.1 33869959 5 613051 613116 Spizellomyces punctatus 109760 GAG|GTATGTTTAG...CTGCATGTGACA/AATGTACACACT...TGTAG|ATA 2 1 85.59

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);