WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 33869950

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
189663900	GT-AG	5.308789487471512e-05	79	rna-XM_016756955.1 33869950	1	264841	264919	Spizellomyces punctatus 109760	GAG\|GTACGTGCTG...CTTACCTTATTC/TACGTTCTTACC...AATAG\|ATT	0	1	7.454
189663901	GT-AG	0.0007722657026682	73	rna-XM_016756955.1 33869950	2	264738	264810	Spizellomyces punctatus 109760	GAG\|GTACATTTGT...GTCTTCTTACGA/TTACAACTGATT...GTTAG\|ACT	0	1	8.422
189663902	GT-AG	0.0036396541852491	93	rna-XM_016756955.1 33869950	3	264387	264479	Spizellomyces punctatus 109760	ACG\|GTATGCAGAT...GTGGTCTGAACA/ACATTGTTCATC...AATAG\|AAA	0	1	16.747
189663903	GT-AG	1.000000099473604e-05	58	rna-XM_016756955.1 33869950	4	264209	264266	Spizellomyces punctatus 109760	AAG\|GTGAGATAAC...AACGCTTTAGAT/ATTGTGTTAAAA...CGTAG\|GAG	0	1	20.62
189663904	GT-AG	0.0001642263222904	59	rna-XM_016756955.1 33869950	5	263969	264027	Spizellomyces punctatus 109760	CAC\|GTACGTATCA...TGGCCCTTTCTA/CCCTTTCTAAGA...TACAG\|AGG	1	1	26.46
189663905	GT-AG	1.8941646342144367e-05	71	rna-XM_016756955.1 33869950	6	263511	263581	Spizellomyces punctatus 109760	AAG\|GTTCGTATCT...GAAACCTTAGCC/CTCCTTCTGAAA...TTAAG\|AAA	1	1	38.948
189663906	GT-AG	0.0004882113197776	58	rna-XM_016756955.1 33869950	7	261810	261867	Spizellomyces punctatus 109760	GCG\|GTAAGCTTTG...CTAGCCCTAATC/TCTCTTCTGATT...TTTAG\|GAC	0	1	91.965
189667563	GT-AG	1.000000099473604e-05	94	rna-XM_016756955.1 33869950	8	261511	261604	Spizellomyces punctatus 109760	AAT\|GTGAGTGTTG...ATCTTTTTAGGC/ACTTGGCTCAAT...ACCAG\|CCG		0	98.58

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);