WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 33869946

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
189663880	GT-AG	0.0012525107381373	54	rna-XM_016748448.1 33869946	1	285799	285852	Spizellomyces punctatus 109760	CAG\|GTACCAACAT...GTTTCTTTGAAT/TGAATCCTCATG...TATAG\|ATG	1	1	0.813
189663881	GT-AG	0.0001085586176273	86	rna-XM_016748448.1 33869946	2	285615	285700	Spizellomyces punctatus 109760	TTT\|GTACGTGCAA...TCGTCTTTTACT/CTTTTACTAACA...GTCAG\|GAA	0	1	4.0
189663882	GT-AG	2.8784510223016974e-05	80	rna-XM_016748448.1 33869946	3	285374	285453	Spizellomyces punctatus 109760	CAT\|GTGAGTTTTG...ATATCTTTGAAA/ATATCTTTGAAA...GGCAG\|ATT	2	1	9.236
189663883	GT-AG	1.000000099473604e-05	62	rna-XM_016748448.1 33869946	4	285229	285290	Spizellomyces punctatus 109760	AAG\|GTAAAAGTCC...GTACTCGTACAA/CAAGAACTGACA...ATTAG\|ATA	1	1	11.935
189663884	GT-AG	1.000000099473604e-05	56	rna-XM_016748448.1 33869946	5	285060	285115	Spizellomyces punctatus 109760	TAT\|GTAAGGCAAC...CGCCTCTAGAAT/CAGAAACTGACA...TGCAG\|CAC	0	1	15.61
189663885	GT-AG	1.000000099473604e-05	55	rna-XM_016748448.1 33869946	6	284080	284134	Spizellomyces punctatus 109760	AAG\|GTCGGTTTTT...TTCCGATTGATT/TTCCGATTGATT...CTTAG\|GCT	1	1	45.691
189663886	GT-AG	1.000000099473604e-05	59	rna-XM_016748448.1 33869946	7	283850	283908	Spizellomyces punctatus 109760	ATG\|GTGCGTGCTA...TGACTCTTGATA/GTTATTGTGACT...TCTAG\|TCT	1	1	51.252

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);