WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 33469755

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
187539020	GT-AG	1.000000099473604e-05	701	rna-XM_002465613.2 33469755	1	73600882	73601582	Sorghum bicolor 4558	CAG\|GTAGGGTACC...TTGACTTTATAT/ATATGCTTCACA...TGCAG\|GTT	0	1	5.022
187539021	GT-AG	0.0124365751062439	515	rna-XM_002465613.2 33469755	2	73601772	73602286	Sorghum bicolor 4558	GAG\|GTATTTTTCC...TTTTCCATACAT/ATTTGTGTCATT...TACAG\|GTC	0	1	9.745
187539022	GT-AG	1.9759814403451837e-05	174	rna-XM_002465613.2 33469755	3	73602380	73602553	Sorghum bicolor 4558	GAG\|GTGTGTTCTT...ATTTCCTTCTAA/ATATGATTGATT...AATAG\|ATT	0	1	12.069
187539023	GT-AG	4.436480933539479e-05	82	rna-XM_002465613.2 33469755	4	73602737	73602818	Sorghum bicolor 4558	GAG\|GTGACTTTAC...GTATCCTGAGTC/CCAGTGCTTATT...TGCAG\|GTG	0	1	16.642
187539024	GT-AG	5.429643650696736e-05	79	rna-XM_002465613.2 33469755	5	73602922	73603000	Sorghum bicolor 4558	CTG\|GTAATTTATA...GACGTTTTGATC/CAATGCTTCATT...TGCAG\|CGG	1	1	19.215
187539025	GT-AG	0.0001598069570629	1190	rna-XM_002465613.2 33469755	6	73603187	73604376	Sorghum bicolor 4558	AAG\|GTAACTACGA...TGTCTCTTAAGA/GATGTGTTCAGT...TGCAG\|GAA	1	1	23.863
187539026	GT-AG	1.000000099473604e-05	1299	rna-XM_002465613.2 33469755	7	73606803	73608101	Sorghum bicolor 4558	CCT\|GTAAGAACCT...ATAGTCTGGACT/GTCAATTTTATG...TTCAG\|AAG	0	1	84.483
187539027	GT-AG	1.000000099473604e-05	829	rna-XM_002465613.2 33469755	8	73608719	73609547	Sorghum bicolor 4558	TCG\|GTAATACTTG...AAGTATTTAGCA/GTTGTGCTGAAA...TGAAG\|GTA	2	1	99.9

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);