WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 33469749

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
187538948	GT-AG	1.000000099473604e-05	1248	rna-XM_002463717.2 33469749	1	4675560	4676807	Sorghum bicolor 4558	AAG\|GTACGTTACG...AAGAGCTAAACT/GCTAAACTCATC...GGCAG\|GTG	1	1	3.978
187538949	GT-AG	0.0007245117664358	246	rna-XM_002463717.2 33469749	2	4678452	4678697	Sorghum bicolor 4558	CAG\|GTATATACTC...CCACTCTTAAAA/ATCATATTCATT...TACAG\|GGG	1	1	44.095
187538950	GT-AG	0.0006190855310318	101	rna-XM_002463717.2 33469749	3	4678967	4679067	Sorghum bicolor 4558	GTG\|GTAATTTTCT...TTTATTTTACCA/TTTTATTTTACC...CTCAG\|ATT	0	1	50.659
187538951	GT-AG	1.000000099473604e-05	130	rna-XM_002463717.2 33469749	4	4679278	4679407	Sorghum bicolor 4558	GAG\|GTACAGAACA...AGTATTTTTGTG/CAAACACTCACG...CACAG\|GTA	0	1	55.783
187538952	GT-AG	6.34014977369265e-05	153	rna-XM_002463717.2 33469749	5	4679627	4679779	Sorghum bicolor 4558	CAT\|GTAAGTCTTG...ATGACCATGATT/ATGACCATGATT...GTCAG\|ACC	0	1	61.127
187538953	GT-AG	1.000000099473604e-05	206	rna-XM_002463717.2 33469749	6	4680746	4680951	Sorghum bicolor 4558	CAG\|GTGAGGATAA...TTGTTCATGACA/TTGTTCCTCATC...TACAG\|GCA	0	1	84.7
187538954	GT-AG	0.0037038810757149	106	rna-XM_002463717.2 33469749	7	4681048	4681153	Sorghum bicolor 4558	GAG\|GTATTCTGAC...GTTCTTCTAAAG/TGGCATTTCATT...TGCAG\|GTG	0	1	87.042
187538955	GT-AG	1.000000099473604e-05	88	rna-XM_002463717.2 33469749	8	4681253	4681340	Sorghum bicolor 4558	CAG\|GTTAGTTACC...CTCCTCTGAACA/CATTGTCTCAAT...ATCAG\|ATC	0	1	89.458
187538956	GC-AG	1.000000099473604e-05	121	rna-XM_002463717.2 33469749	9	4681531	4681651	Sorghum bicolor 4558	AAG\|GCAAGCATCT...TAAATCTGACAT/ATAAATCTGACA...TGCAG\|CTT	1	1	94.095

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);