WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 33469748

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
187538939	GT-AG	6.529052558181095e-05	2010	rna-XM_002463715.2 33469748	1	4661673	4663682	Sorghum bicolor 4558	AAG\|GTATGTACGT...CCACTTTTACCA/TTACCATTCACC...GGCAG\|GTG	1	1	4.042
187538940	GT-AG	0.000154210140897	272	rna-XM_002463715.2 33469748	2	4665342	4665613	Sorghum bicolor 4558	CAG\|GTAAACAATC...ACGTCCTTAACA/AGTCCTTTTACT...CACAG\|GGG	1	1	44.436
187538941	GT-AG	1.3667923662477897e-05	91	rna-XM_002463715.2 33469748	3	4665877	4665967	Sorghum bicolor 4558	GTG\|GTAATGTTTC...GGTTTTTCAATC/TGGTTTTTCAAT...CTCAG\|ATT	0	1	50.84
187538942	GT-AG	1.000000099473604e-05	86	rna-XM_002463715.2 33469748	4	4666178	4666263	Sorghum bicolor 4558	GAG\|GTGCATACTT...TTGACCTTCCCA/AAACAACTCATG...TACAG\|GTA	0	1	55.953
187538943	GT-AG	0.0001110158699842	135	rna-XM_002463715.2 33469748	5	4666483	4666617	Sorghum bicolor 4558	CCT\|GTAAGCCCTA...TTATACATGACT/TTATACATGACT...GTCAG\|GTC	0	1	61.286
187538944	GT-AG	1.000000099473604e-05	196	rna-XM_002463715.2 33469748	6	4667584	4667779	Sorghum bicolor 4558	CAG\|GTGAGCATTG...GTCATTTTACTA/ATTTTACTAATC...TGCAG\|GCA	0	1	84.806
187538945	GT-AG	0.0951907486079864	120	rna-XM_002463715.2 33469748	7	4667876	4667995	Sorghum bicolor 4558	GAG\|GTACCCCTTA...TCAGTCCTACCC/CCAATGCTGACA...CACAG\|GTG	0	1	87.144
187538946	GT-AG	1.000000099473604e-05	85	rna-XM_002463715.2 33469748	8	4668095	4668179	Sorghum bicolor 4558	CAG\|GTCAGCCCCA...CTCCTCTAAACA/TTATCCATCATT...CACAG\|GTG	0	1	89.554
187538947	GT-AG	7.602268936192532e-05	122	rna-XM_002463715.2 33469748	9	4668370	4668491	Sorghum bicolor 4558	AAG\|GTAAGCATGT...GCAACCTTGACA/CTTGACATAATA...TGCAG\|CAT	1	1	94.181

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);