WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 33342841

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
186783488	GT-AG	1.000000099473604e-05	960	rna-XM_015203180.2 33342841	1	3615293	3616252	Solanum pennellii 28526	AAG\|GTAATACTCC...ATTTTCTAATTT/CATTTTCTAATT...TGCAG\|GTG	1	1	3.622
186783489	GT-AG	0.0710542655248238	321	rna-XM_015203180.2 33342841	2	3617927	3618247	Solanum pennellii 28526	CTG\|GTATGTTTTC...ATTGTCTTAATG/TATTGTCTTAAT...TGCAG\|GTG	1	1	44.591
186783490	GT-AG	0.0003034718200336	126	rna-XM_015203180.2 33342841	3	3618508	3618633	Solanum pennellii 28526	GTG\|GTAAGCTCTT...TTTTCTTTTATG/TTTATGTTCAAT...CTCAG\|GTT	0	1	50.954
186783491	GT-AG	0.0010840614933792	159	rna-XM_015203180.2 33342841	4	3618844	3619002	Solanum pennellii 28526	GAG\|GTACTTTTGA...TTATCTGTGATT/TTCAAATTTATC...TGCAG\|ACG	0	1	56.094
186783492	GT-AG	1.000000099473604e-05	650	rna-XM_015203180.2 33342841	5	3619222	3619871	Solanum pennellii 28526	ATT\|GTGAGTATCT...TGTACATTGATT/TGTACATTGATT...GTTAG\|GTC	0	1	61.454
186783493	GT-AG	1.3180671048851671e-05	723	rna-XM_015203180.2 33342841	6	3620838	3621560	Solanum pennellii 28526	CAG\|GTTTTACTCT...CCTTTCTTACCC/TCCTTTCTTACC...CTCAG\|GCA	0	1	85.095
186783494	GT-AG	0.0002366199306234	191	rna-XM_015203180.2 33342841	7	3621657	3621847	Solanum pennellii 28526	GAG\|GTAATCTTGT...ACCTTTTTACTG/CACCTTTTTACT...TGCAG\|GTG	0	1	87.445
186783495	GT-AG	9.820427144327924e-05	249	rna-XM_015203180.2 33342841	8	3621947	3622195	Solanum pennellii 28526	CAG\|GTCTATCGAA...ACCTCCTTAATA/TTCCTATTGATC...TTCAG\|ATC	0	1	89.868
186783496	GT-AG	0.001804652268032	499	rna-XM_015203180.2 33342841	9	3622386	3622884	Solanum pennellii 28526	AAG\|GTACACTGTT...TGATTATTGATT/TGATTATTGATT...TGCAG\|CAT	1	1	94.518

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);