WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 33313311

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
186656576	GT-AG	1.000000099473604e-05	2201	rna-XM_010329370.3 33313311	1	88095568	88097768	Solanum lycopersicum 4081	CAG\|GTTGTTTTCT...AACTCCGTATTT/TCCGTATTTAAA...TGCAG\|GTC	0	1	3.906
186656577	GT-AG	1.000000099473604e-05	1535	rna-XM_010329370.3 33313311	2	88092953	88094487	Solanum lycopersicum 4081	AAG\|GTTAGTTATT...CCTTCTTTAACT/CCTTCTTTAACT...TGCAG\|AAG	0	1	23.996
186656578	GT-AG	0.0256940388798542	1187	rna-XM_010329370.3 33313311	3	88091668	88092854	Solanum lycopersicum 4081	AAG\|GTTTTCTCTT...GTACTCTTAACT/GTACTCTTAACT...TCCAG\|GAA	2	1	25.818
186656579	GT-AG	0.0120793749051345	500	rna-XM_010329370.3 33313311	4	88090993	88091492	Solanum lycopersicum 4081	GAG\|GTATGCATGC...GCTATTTTAATG/ATTTTAATGATT...CCCAG\|GTC	0	1	29.074
186656580	GT-AG	1.000000099473604e-05	225	rna-XM_010329370.3 33313311	5	88089852	88090076	Solanum lycopersicum 4081	GAT\|GTAAGTCAAA...GTTGCCTTTGTT/TTATTTTTTATG...GCCAG\|CCC	1	1	46.112
186656581	GT-AG	2.636347062910612e-05	336	rna-XM_010329370.3 33313311	6	88088494	88088829	Solanum lycopersicum 4081	AAG\|GTTTGGTTTC...ACTTCCATATTT/TCCAAACTTAAC...CACAG\|TTT	0	1	65.123
186656582	GT-AG	1.000000099473604e-05	1105	rna-XM_010329370.3 33313311	7	88086313	88087417	Solanum lycopersicum 4081	GGG\|GTAAGGTTCC...TATTTCCTGATA/TATTTCCTGATA...TGCAG\|GGG	2	1	85.138

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);