WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 32796541

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
183366776	GT-AG	1.000000099473604e-05	95	rna-XM_034731681.1 32796541	1	7782959	7783053	Setaria viridis 4556	AAG\|GTACGAGTCC...GATTTCTGATCG/CGATTTCTGATC...TGCAG\|CTG	0	1	1.644
183366777	GT-AG	1.000000099473604e-05	88	rna-XM_034731681.1 32796541	2	7782688	7782775	Setaria viridis 4556	GAG\|GTGAAGCTCG...CTGGTGTTGCCT/CTGTGTGTAATG...TGCAG\|GAA	0	1	3.778
183366778	GT-AG	0.0166216197133401	463	rna-XM_034731681.1 32796541	3	7776339	7776801	Setaria viridis 4556	AAG\|GTATATTATG...TTGGTCTTAAAT/TACTTTCTAATT...TACAG\|AAG	0	1	72.411
183366779	GT-AG	1.000000099473604e-05	141	rna-XM_034731681.1 32796541	4	7775393	7775533	Setaria viridis 4556	AAG\|GTGAGCTGTC...TGGTTGTTAATA/TGGTTGTTAATA...TGCAG\|AAA	1	1	81.798
183366780	GT-AG	1.000000099473604e-05	114	rna-XM_034731681.1 32796541	5	7774602	7774715	Setaria viridis 4556	ATG\|GTAAGTATGT...ATATGCTTACTT/TATATGCTTACT...CGCAG\|AAT	0	1	89.692
183366781	GT-AG	1.2825156605106084e-05	78	rna-XM_034731681.1 32796541	6	7774400	7774477	Setaria viridis 4556	AAG\|GTAAGCATGT...TCACTTTTAGTT/TACAGACTCACT...TGCAG\|CAC	1	1	91.138
183366782	GT-AG	0.0002949728052849	78	rna-XM_034731681.1 32796541	7	7774240	7774317	Setaria viridis 4556	GTG\|GTAACTGCAA...TTCCTTTTATTT/TTTCCTTTTATT...AACAG\|GGT	2	1	92.094
183380383	GT-AG	1.000000099473604e-05	375	rna-XM_034731681.1 32796541	8	7773754	7774128	Setaria viridis 4556	GAG\|GTGAGTGATG...TTCATATTAACG/TTCATATTAACG...TGCAG\|CTG		0	93.389

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);