WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 32765340

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
183237961	GT-AG	0.0001181927391018	765	rna-XM_004953591.3 32765340	2	36087813	36088577	Setaria italica 4555	GAG\|GTTTTTTCCA...TGCGCTTTCATT/TGTTTATTCACT...TGCAG\|TTA	0	1	8.418
183237962	GT-AG	0.0003974768313307	369	rna-XM_004953591.3 32765340	3	36087234	36087602	Setaria italica 4555	GAT\|GTAAGTTGGT...ATTTCCTTACTG/TATTTCCTTACT...GGCAG\|CTG	0	1	14.215
183237963	GT-AG	0.0004784373234358	100	rna-XM_004953591.3 32765340	4	36086880	36086979	Setaria italica 4555	TGA\|GTATGTCAGT...ATGTGGTTAACT/TTGTGTTTCATT...TTTAG\|GCG	2	1	21.226
183237964	GT-AG	0.0018543559449119	335	rna-XM_004953591.3 32765340	5	36086274	36086608	Setaria italica 4555	AAG\|GTAACTATCC...GATGTTTTAACA/TGTTTGCTCATT...TGCAG\|GAT	0	1	28.705
183237965	GT-AG	1.000000099473604e-05	330	rna-XM_004953591.3 32765340	6	36085860	36086189	Setaria italica 4555	AAA\|GTAAGTGCAA...TCTTCTTCAATA/TTCTTCTTCAAT...TTCAG\|GAG	0	1	31.024
183237966	GT-AG	0.0003728331764362	85	rna-XM_004953591.3 32765340	7	36083676	36083760	Setaria italica 4555	AGT\|GTAAGTATTG...GTTTCCTGAACC/TGTTTCCTGAAC...CAAAG\|TGC	2	1	88.959
183237967	GT-AG	1.000000099473604e-05	201	rna-XM_004953591.3 32765340	8	36083282	36083482	Setaria italica 4555	CAG\|GTAATACCCT...GGAGCCTTGTCT/CTATAGCTAACT...TTTAG\|GCT	0	1	94.287
183249966	GT-AG	1.000000099473604e-05	286	rna-XM_004953591.3 32765340	1	36088780	36089065	Setaria italica 4555	CCG\|GTGAGCGCCC...GTTTTCTTGGCT/GGTTTGGTAACC...TGCAG\|GGA		0	4.609

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);