WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 32739533

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
183117557	GT-AG	0.0023567335821329	298	rna-XM_011079037.2 32739533	1	10365849	10366146	Sesamum indicum 4182	TAA\|GTAAGCCTTC...TTTGTTTTGATT/TTTGTTTTGATT...ATCAG\|AAA	1	1	3.269
183117558	GT-AG	1.000000099473604e-05	89	rna-XM_011079037.2 32739533	2	10365674	10365762	Sesamum indicum 4182	GAG\|GTGGTTGTTA...TGTTCTGTATCT/CTGTATCTAATA...TATAG\|GGC	0	1	6.168
183117559	GT-AG	1.000000099473604e-05	101	rna-XM_011079037.2 32739533	3	10364808	10364908	Sesamum indicum 4182	GAG\|GTAAAAGTCG...GTCATCTTGATT/CCCTTTTTCATT...TGCAG\|ACT	0	1	31.951
183117560	GT-AG	0.0622888723263022	97	rna-XM_011079037.2 32739533	4	10363364	10363460	Sesamum indicum 4182	GCT\|GTATGTTAAC...TATCACTTAGCT/CTGTTACTCAAT...ATCAG\|GTT	0	1	77.351
183117561	GT-AG	0.0066986909052936	228	rna-XM_011079037.2 32739533	5	10363004	10363231	Sesamum indicum 4182	TTA\|GTATGTACCT...TACTGCTTAACG/CATTTGCTTACA...GCTAG\|GTT	0	1	81.8
183117562	GT-AG	1.000000099473604e-05	201	rna-XM_011079037.2 32739533	6	10362621	10362821	Sesamum indicum 4182	AAA\|GTAAGTGCTC...TGTTCTTTGTTT/GTTTGCCTGAAA...CTCAG\|GGT	2	1	87.934
183117563	GT-AG	1.000000099473604e-05	113	rna-XM_011079037.2 32739533	7	10362396	10362508	Sesamum indicum 4182	AAG\|GTAAATCTTT...AACGGCTTATCT/TAAATGATCATC...TGCAG\|ATC	0	1	91.709
183117564	GT-AG	0.0007320374785077	80	rna-XM_011079037.2 32739533	8	10362172	10362251	Sesamum indicum 4182	CAG\|GTACACAACC...AAGGTTTTAACA/AAGGTTTTAACA...GTCAG\|TTC	0	1	96.562

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);