WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 32739523

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
183117414	GT-AG	0.0002195046385897	218	rna-XM_011087548.2 32739523	2	14595811	14596028	Sesamum indicum 4182	AAG\|GTATGTGCTT...AACTTTTTGACA/AACTTTTTGACA...TATAG\|GTT	0	1	52.829
183117415	GT-AG	9.295924213122305e-05	78	rna-XM_011087548.2 32739523	3	14596256	14596333	Sesamum indicum 4182	TGG\|GTAATGTTTG...TAGTTCTTGACT/TAGTTCTTGACT...TGCAG\|GGT	2	1	59.925
183117416	GT-AG	0.0026105491628528	1886	rna-XM_011087548.2 32739523	4	14596667	14598552	Sesamum indicum 4182	CAG\|GTAACTCCTC...TAAGCTTTATCT/CTTTATCTGATA...TACAG\|CTC	2	1	70.334
183117417	GT-AG	1.000000099473604e-05	814	rna-XM_011087548.2 32739523	5	14598800	14599613	Sesamum indicum 4182	CAG\|GTGTTGCTCA...TGACCTTTCATG/GTGAAATTGACC...TGCAG\|ATG	0	1	78.056
183117418	GT-AG	1.000000099473604e-05	79	rna-XM_011087548.2 32739523	6	14599743	14599821	Sesamum indicum 4182	CAG\|GTAAGTGGAT...GTTCACTTATTA/TGTTCACTTATT...TGCAG\|TTA	0	1	82.088
183117419	GT-AG	1.000000099473604e-05	146	rna-XM_011087548.2 32739523	7	14600038	14600183	Sesamum indicum 4182	AAG\|GTGTGAAACC...TCGGTTTTGCTT/GCGTGTTTGAAA...TGCAG\|GTT	0	1	88.84
183117420	GT-AG	0.0010673896004066	167	rna-XM_011087548.2 32739523	8	14600308	14600474	Sesamum indicum 4182	CAA\|GTATGTCCTT...TGGTTTGTGATT/TGGTTTGTGATT...TTCAG\|ATG	1	1	92.716
183125185	GT-AG	1.5280333535235115e-05	286	rna-XM_011087548.2 32739523	1	14593872	14594157	Sesamum indicum 4182	GAG\|GTTCTCGCTC...GGTGCTTTATTG/ACTGATTTGATT...ATTAG\|GGT		0	4.345

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);