WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 32739509

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
183117241	GT-AG	0.0624018981366305	401	rna-XM_011074117.2 32739509	1	7090000	7090400	Sesamum indicum 4182	CAG\|GTATTCTCTC...ATTTTCTTGGTA/AACGAACTAACT...TTCAG\|GTG	0	1	2.444
183117242	GT-AG	1.866731318269913e-05	92	rna-XM_011074117.2 32739509	3	7090576	7090667	Sesamum indicum 4182	ACG\|GTATGAAATG...GCTTTCTTGCCA/TTCAATCTAATA...TATAG\|GGG	0	1	7.895
183117243	GT-AG	0.0016781661539684	335	rna-XM_011074117.2 32739509	4	7090791	7091125	Sesamum indicum 4182	CAT\|GTAAGTTTTC...TTTGTCTTATAT/TTTTGTCTTATA...AACAG\|GTA	0	1	11.748
183117244	GT-AG	1.000000099473604e-05	94	rna-XM_011074117.2 32739509	5	7091164	7091257	Sesamum indicum 4182	GAG\|GTGCTGATTA...ACATTCTTGGCT/CTTGTGTTGATT...CACAG\|AGT	2	1	12.939
183117245	GT-AG	0.0002496987655039	183	rna-XM_011074117.2 32739509	6	7091364	7091546	Sesamum indicum 4182	GAA\|GTAATCTCGT...TGGACTTTGCTA/CAAAGACTGATA...TACAG\|GAT	0	1	16.259
183117246	GT-AG	1.000000099473604e-05	107	rna-XM_011074117.2 32739509	7	7093734	7093840	Sesamum indicum 4182	GAG\|GTAAATCTTC...TGTATCATGATT/TTTTGTATCATG...AACAG\|GGT	0	1	84.774
183117247	GT-AG	1.000000099473604e-05	362	rna-XM_011074117.2 32739509	8	7094000	7094361	Sesamum indicum 4182	CAG\|GTTAGTAAAG...TTTGTTTCGATG/CCTGCAATTATT...TGCAG\|CTA	0	1	89.756
183117248	GT-AG	0.0010125858484715	319	rna-XM_011074117.2 32739509	9	7094466	7094784	Sesamum indicum 4182	GAG\|GTATGGTGTT...TATGCCTTAAAA/CTAACATTCAAT...TGCAG\|CAA	2	1	93.014

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);