introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 32739501

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Suggested facets: dinucleotide_pair, score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
183117099 GT-AG 0 0.021627688598501 729 rna-XM_011095711.2 32739501 2 18390057 18390785 Sesamum indicum 4182 CCG|GTATGTATTA...TCATCTTTGATA/TCATCTTTGATA...AGCAG|GTG 0 1 14.223
183117100 GT-AG 0 1.000000099473604e-05 173 rna-XM_011095711.2 32739501 3 18389604 18389776 Sesamum indicum 4182 AAG|GTTATTTGTT...TAATTCTTAATT/ATTCTGCTCATT...GACAG|GTG 1 1 22.451
183117101 GC-AG 0 1.000000099473604e-05 149 rna-XM_011095711.2 32739501 4 18389090 18389238 Sesamum indicum 4182 GAG|GCATGTCATA...TTGTCCATATTC/ATGTCGGTGACT...TGCAG|ATG 0 1 33.177
183117102 GT-AG 0 0.0043230971622203 140 rna-XM_011095711.2 32739501 5 18388823 18388962 Sesamum indicum 4182 CAT|GTATGTTGAG...CATCACTTATTT/TCTAGTCTGATT...TGCAG|ATG 1 1 36.909
183117103 GT-AG 0 1.000000099473604e-05 273 rna-XM_011095711.2 32739501 6 18387536 18387808 Sesamum indicum 4182 AAG|GTAATGGCAC...TAATCCTTTTTT/TTAATATTAATC...GTCAG|AAA 1 1 66.706
183117104 GT-AG 0 1.000000099473604e-05 118 rna-XM_011095711.2 32739501 7 18386684 18386801 Sesamum indicum 4182 CAG|GTAGGAGAAG...AGAATATTATAT/GCAATACTGATG...TGCAG|GTC 0 1 88.275
183125174 GT-AG 0 0.6990058309423359 82 rna-XM_011095711.2 32739501 1 18391162 18391243 Sesamum indicum 4182 CGT|GTAACCGTGA...TAACTCTTAACT/TCTTAACTAATT...TACAG|CAT   0 4.349

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);