WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 32739466

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
183116621	GT-AG	4.1695974539141815e-05	697	rna-XM_011095377.2 32739466	2	18229909	18230605	Sesamum indicum 4182	CAG\|GTTGCTAGAA...GTTTTTTTGATC/GTTTTTTTGATC...CGCAG\|GTC	0	1	4.644
183116622	GT-AG	0.0709896048917148	1480	rna-XM_011095377.2 32739466	3	18230795	18232274	Sesamum indicum 4182	GAA\|GTATGCCCTA...TGTTACTTAACT/CTGTTACTTAAC...TTCAG\|GTG	0	1	9.363
183116623	GT-AG	1.000000099473604e-05	118	rna-XM_011095377.2 32739466	4	18232368	18232485	Sesamum indicum 4182	GAG\|GTGAGTAGTT...ACTGTCTGACTA/AACTGTCTGACT...TATAG\|GTT	0	1	11.685
183116624	GT-AG	1.000000099473604e-05	80	rna-XM_011095377.2 32739466	5	18232669	18232748	Sesamum indicum 4182	GAG\|GTGACTTCAT...TTCATCTGATAA/GTTCATCTGATA...TGCAG\|GTC	0	1	16.255
183116625	GT-AG	0.0001442567059563	94	rna-XM_011095377.2 32739466	6	18232852	18232945	Sesamum indicum 4182	CCG\|GTATTAAATT...TGTTCCTCGATT/CTGAAATTGATT...TGCAG\|CGG	1	1	18.826
183116626	GT-AG	3.192093933383532e-05	102	rna-XM_011095377.2 32739466	7	18233132	18233233	Sesamum indicum 4182	AAG\|GTAAGCTTGG...CAGCTTGTAACA/TGTATATTCAAT...CTCAG\|GTA	1	1	23.471
183116627	GT-AG	0.0020704086090679	586	rna-XM_011095377.2 32739466	8	18235699	18236284	Sesamum indicum 4182	CCT\|GTAAATTACA...GTTATTTTAACC/TTCCTTTTCATT...TTCAG\|AAG	0	1	85.019
183116628	GT-AG	7.516234800647323e-05	1179	rna-XM_011095377.2 32739466	9	18236875	18238053	Sesamum indicum 4182	GAG\|GTAACGGTAA...CATTTCTTGATG/TCTAATTTTATT...AACAG\|GAG	2	1	99.75

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);